Factsheet for TraesCS1B01G249300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G237800.3	Wheat	cytosol	99.45	99.73
TraesCS1A01G234200.1	Wheat	cytosol	98.9	98.9
HORVU1Hr1G057660.1	Barley	cytosol	97.53	97.8
Os05t0376000-00	Rice	cytosol	45.75	79.9
VIT_07s0031g00600.t01	Wine grape	cytosol	67.4	68.52
GSMUA_Achr2P14710_001	Banana	cytosol	67.12	68.25
GSMUA_Achr4P24260_001	Banana	cytosol	60.55	67.17
KRH77004	Soybean	nucleus	66.3	66.85
KRH28467	Soybean	cytosol	66.3	66.3
TraesCS3B01G532600.3	Wheat	cytosol	64.66	63.27
AT4G36960.2	Thale cress	cytosol	64.11	61.74
PGSC0003DMT400010280	Potato	cytosol	62.47	61.46
Solyc02g090910.2.1	Tomato	nucleus	62.74	60.9
CDY42724	Canola	cytosol	62.74	60.42
CDY69852	Canola	cytosol	62.74	59.95
Bra017802.1-P	Field mustard	nucleus	61.92	55.39
CDX69279	Canola	nucleus	21.92	33.9
TraesCS7B01G266900.1	Wheat	nucleus	25.48	24.6
TraesCS6B01G217500.1	Wheat	nucleus	26.58	23.43
TraesCS1B01G168200.1	Wheat	nucleus	27.12	21.9
TraesCS6B01G321300.2	Wheat	nucleus	20.82	20.38
TraesCS7B01G178300.1	Wheat	nucleus	19.73	20.22
TraesCS2B01G216600.2	Wheat	cytosol	24.66	19.11
TraesCS5B01G410100.1	Wheat	nucleus	17.26	17.95
TraesCS6B01G306600.1	Wheat	plastid	13.15	16.84
TraesCS7B01G299000.1	Wheat	mitochondrion, nucleus, plastid	12.88	16.49
TraesCS3B01G562300.3	Wheat	mitochondrion	13.42	15.71
TraesCS7B01G084600.1	Wheat	nucleus	12.88	15.67
TraesCS3B01G419200.1	Wheat	nucleus	12.6	15.54
TraesCS3B01G250700.1	Wheat	golgi	17.53	14.55
TraesCS4B01G225300.1	Wheat	nucleus	10.68	14.29
TraesCS6B01G348100.1	Wheat	plastid	12.05	14.15
TraesCS4B01G197500.2	Wheat	cytosol, mitochondrion, nucleus	11.23	13.71
TraesCS3B01G211700.1	Wheat	nucleus	16.16	13.02
TraesCS2B01G556700.1	Wheat	nucleus	17.26	12.38

Protein Annotations

EnsemblPlants:TraesCS1B01G249300.1	EnsemblPlantsGene:TraesCS1B01G249300	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom	PANTHER:PTHR45519
PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360	SUPFAM:SSF54928	MapMan:35.1

Description

No Description!

Coordinates

chr1B:-:441654272..441660080

Molecular Weight (calculated)

40277.3 Da

IEP (calculated)

7.268

GRAVY (calculated)

-0.587

Length

365 amino acids

Sequence
(BLAST)

001: MASKLVVLGI PWDVDTEGLK EYMSKFGPLD DCIVMKDRSS GRSRGFGYVT FSSVEDAKNV VNSEHILGDR TLEVKIATPK EEMRAPGNKK ATRIFVARIP
101: QSVDESMFRR HFQTFGEITD LYMPKELGSK EHRGIGFVTF RSAECVDNVM QENHEIDGTT VVVDRATPKQ DEEVRHPPRR GGGAQGEGGY GSYNAYITAA
201: TRYAALGVPT LYDHPGPAYG RGYLNEPPVS SKKIFIGRLP QEANTDDLWD YFGRFGRIVD AYIPKDPKKS GHRGFGFVTF AEDGVADRVA RRSHEILGQE
301: VAVDSAAPVE GGPSRGGYME PPGPYGAYSP MMSYGQFSGS LGYDYGYGPS GSSSRSRVQP RYRPY

Best Arabidopsis Sequence Match ( AT4G36960.2 )
(BLAST)

001: MERKLVVLGI PWDIDSDGLK DYMSKFGDLE DCIVMKDRST GRSRGFGYVT FASAEDAKNA LKGEHFLGNR ILEVKVATPK EEMRQPAKKV TRIFVARIPS
101: SVSESDFRSH FERYGEITDL YMPKDYNSKQ HRGIGFITFS SADSVEDLME DTHDLGGTTV AVDRATPKED DHPPRPPPVA RMSRPPVAIA GGFGAPGGYG
201: AYDAYISAAT RYAALGAPTL YDNPATFYGR GEPTTRGIGN KIFVGRLPQE ASVDDLRDYF GRFGHIQDAY IPKDPKRSGH RGFGFVTFAE NGVADRVARR
301: SHEICGQEVA IDSATPLDEA GPSAGASSML SSSRPEYFGG YGGPMRAFGR MYGGMSLDDW GYGMPNARPS RPDRRYRPY

Arabidopsis Description

AT4g36960/C7A10_400 [Source:UniProtKB/TrEMBL;Acc:Q94AC3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.