Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G480300.1 | Wheat | cytosol | 95.17 | 95.17 |
| TraesCS3A01G485000.1 | Wheat | cytosol | 94.1 | 94.1 |
| HORVU3Hr1G105930.10 | Barley | cytoskeleton, cytosol, nucleus | 90.35 | 90.84 |
| KXG34100 | Sorghum | cytosol | 71.31 | 73.89 |
| Zm00001d011885_P008 | Maize | cytosol | 69.97 | 72.5 |
| Os01t0945800-01 | Rice | nucleus | 70.51 | 72.45 |
| TraesCS1B01G249300.1 | Wheat | cytosol | 63.27 | 64.66 |
| GSMUA_Achr2P14710_001 | Banana | cytosol | 58.98 | 61.28 |
| GSMUA_Achr4P24260_001 | Banana | cytosol | 52.81 | 59.88 |
| VIT_07s0031g00600.t01 | Wine grape | cytosol | 57.37 | 59.61 |
| KRH28467 | Soybean | cytosol | 56.3 | 57.53 |
| KRH77004 | Soybean | nucleus | 55.76 | 57.46 |
| PGSC0003DMT400010280 | Potato | cytosol | 56.03 | 56.33 |
| Solyc02g090910.2.1 | Tomato | nucleus | 56.3 | 55.85 |
| AT4G36960.2 | Thale cress | cytosol | 55.23 | 54.35 |
| CDY42724 | Canola | cytosol | 54.69 | 53.83 |
| Zm00001d042133_P003 | Maize | cytosol | 57.1 | 53.52 |
| CDY69852 | Canola | cytosol | 54.69 | 53.4 |
| Bra017802.1-P | Field mustard | nucleus | 53.89 | 49.26 |
| CDX69279 | Canola | nucleus | 20.64 | 32.63 |
| TraesCS7B01G266900.1 | Wheat | nucleus | 24.66 | 24.34 |
| TraesCS6B01G217500.1 | Wheat | nucleus | 26.01 | 23.43 |
| TraesCS7B01G178300.1 | Wheat | nucleus | 19.84 | 20.79 |
| TraesCS6B01G321300.2 | Wheat | nucleus | 19.57 | 19.57 |
| TraesCS1B01G168200.1 | Wheat | nucleus | 23.59 | 19.47 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 24.4 | 19.32 |
| TraesCS5B01G410100.1 | Wheat | nucleus | 16.62 | 17.66 |
| TraesCS6B01G306600.1 | Wheat | plastid | 13.14 | 17.19 |
| TraesCS7B01G299000.1 | Wheat | mitochondrion, nucleus, plastid | 12.87 | 16.84 |
| TraesCS3B01G419200.1 | Wheat | nucleus | 12.6 | 15.88 |
| TraesCS3B01G250700.1 | Wheat | golgi | 18.5 | 15.68 |
| TraesCS7B01G084600.1 | Wheat | nucleus | 12.6 | 15.67 |
| TraesCS3B01G562300.3 | Wheat | mitochondrion | 12.87 | 15.38 |
| TraesCS4B01G225300.1 | Wheat | nucleus | 10.72 | 14.65 |
| TraesCS6B01G348100.1 | Wheat | plastid | 11.26 | 13.5 |
| TraesCS3B01G211700.1 | Wheat | nucleus | 16.35 | 13.47 |
| TraesCS4B01G197500.2 | Wheat | cytosol, mitochondrion, nucleus | 10.72 | 13.38 |
| TraesCS2B01G556700.1 | Wheat | nucleus | 17.96 | 13.16 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G532600.3 | EnsemblPlantsGene:TraesCS3B01G532600 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR45519 |
| PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | MapMan:35.1 |
Description
No Description!
Coordinates
chr3B:-:773047002..773050876
Molecular Weight (calculated)
40556.7 Da
IEP (calculated)
7.422
GRAVY (calculated)
-0.545
Length
373 amino acids
Sequence
(BLAST)
(BLAST)
001: MATKLVVFGL PWDVDSEGLR KHMAKFGPLE DCVVMKDRFS GRSRGFGYVT FSSADDVKNV LECEHFLGNR ALEVKIATPR EELKPQSQGT KTATRIFVGR
101: IPQSADESMF RRHFEAFGEI IDLYMPKEHG SKGHRGIGFI TFRSAESVDS IMQESHELDG TTLHVDRATP KHQDEDIRHP PSRASQDGGD YGLGYGAYDV
201: YIAAATMFGA LGPPAQYDHP GPAYGRGYSG SPQGTGKKIF VGGIPQEANK DDLRNYFGGF GRVANVFIPR DPKGSGHRAF GFVTFSDEGV ADKVADKSHE
301: ILGCKVTVDI AAPPRGDSSG RFADPMPGME LPAPSYGSMR PFGMFCGNLG SDRGYGPSGG GSRSRTDGRH RPY
101: IPQSADESMF RRHFEAFGEI IDLYMPKEHG SKGHRGIGFI TFRSAESVDS IMQESHELDG TTLHVDRATP KHQDEDIRHP PSRASQDGGD YGLGYGAYDV
201: YIAAATMFGA LGPPAQYDHP GPAYGRGYSG SPQGTGKKIF VGGIPQEANK DDLRNYFGGF GRVANVFIPR DPKGSGHRAF GFVTFSDEGV ADKVADKSHE
301: ILGCKVTVDI AAPPRGDSSG RFADPMPGME LPAPSYGSMR PFGMFCGNLG SDRGYGPSGG GSRSRTDGRH RPY
001: MERKLVVLGI PWDIDSDGLK DYMSKFGDLE DCIVMKDRST GRSRGFGYVT FASAEDAKNA LKGEHFLGNR ILEVKVATPK EEMRQPAKKV TRIFVARIPS
101: SVSESDFRSH FERYGEITDL YMPKDYNSKQ HRGIGFITFS SADSVEDLME DTHDLGGTTV AVDRATPKED DHPPRPPPVA RMSRPPVAIA GGFGAPGGYG
201: AYDAYISAAT RYAALGAPTL YDNPATFYGR GEPTTRGIGN KIFVGRLPQE ASVDDLRDYF GRFGHIQDAY IPKDPKRSGH RGFGFVTFAE NGVADRVARR
301: SHEICGQEVA IDSATPLDEA GPSAGASSML SSSRPEYFGG YGGPMRAFGR MYGGMSLDDW GYGMPNARPS RPDRRYRPY
101: SVSESDFRSH FERYGEITDL YMPKDYNSKQ HRGIGFITFS SADSVEDLME DTHDLGGTTV AVDRATPKED DHPPRPPPVA RMSRPPVAIA GGFGAPGGYG
201: AYDAYISAAT RYAALGAPTL YDNPATFYGR GEPTTRGIGN KIFVGRLPQE ASVDDLRDYF GRFGHIQDAY IPKDPKRSGH RGFGFVTFAE NGVADRVARR
301: SHEICGQEVA IDSATPLDEA GPSAGASSML SSSRPEYFGG YGGPMRAFGR MYGGMSLDDW GYGMPNARPS RPDRRYRPY
Arabidopsis Description
AT4g36960/C7A10_400 [Source:UniProtKB/TrEMBL;Acc:Q94AC3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.