Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G398200.1 | Wheat | cytosol, mitochondrion, nucleus | 97.89 | 98.59 |
| TraesCS7D01G392500.1 | Wheat | cytosol, nucleus, plastid | 98.25 | 97.56 |
| Os06t0622900-01 | Rice | cytosol, mitochondrion, nucleus | 85.26 | 88.36 |
| EER90058 | Sorghum | plastid | 85.96 | 85.66 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 82.11 | 83.87 |
| HORVU7Hr1G093450.6 | Barley | nucleus | 86.32 | 83.67 |
| Zm00001d046716_P001 | Maize | nucleus | 79.65 | 63.06 |
| AT5G53720.1 | Thale cress | cytosol | 17.19 | 49.0 |
| PGSC0003DMT400025900 | Potato | nucleus | 48.77 | 48.43 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 28.77 | 46.33 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 38.6 | 45.64 |
| CDY51790 | Canola | cytosol | 16.84 | 44.86 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 16.84 | 42.86 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 23.86 | 42.77 |
| TraesCS6B01G306600.1 | Wheat | plastid | 40.7 | 40.7 |
| TraesCS3B01G419200.1 | Wheat | nucleus | 40.0 | 38.51 |
| KRH53608 | Soybean | nucleus | 32.28 | 37.4 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 30.88 | 37.29 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 33.68 | 36.36 |
| KRH64318 | Soybean | nucleus | 32.63 | 36.19 |
| AT5G53680.1 | Thale cress | cytosol | 20.7 | 34.91 |
| TraesCS6B01G348100.1 | Wheat | plastid | 36.49 | 33.44 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 20.35 | 33.14 |
| TraesCS3B01G562300.3 | Wheat | mitochondrion | 35.79 | 32.69 |
| TraesCS7B01G084600.1 | Wheat | nucleus | 34.39 | 32.67 |
| TraesCS4B01G225300.1 | Wheat | nucleus | 30.18 | 31.5 |
| TraesCS4B01G197500.2 | Wheat | cytosol, mitochondrion, nucleus | 32.63 | 31.1 |
| Bra029612.1-P | Field mustard | nucleus | 18.25 | 18.12 |
| AT3G06970.1 | Thale cress | nucleus | 18.95 | 17.03 |
| CDY05301 | Canola | nucleus | 19.65 | 15.95 |
| CDY24657 | Canola | nucleus | 18.95 | 15.88 |
| TraesCS3B01G250700.1 | Wheat | golgi | 23.86 | 15.45 |
| CDY08023 | Canola | nucleus | 17.89 | 14.17 |
| TraesCS6B01G217500.1 | Wheat | nucleus | 20.35 | 14.01 |
| CDX74070 | Canola | cytosol | 17.54 | 13.89 |
| TraesCS7B01G266900.1 | Wheat | nucleus | 18.25 | 13.76 |
| Bra001228.1-P | Field mustard | cytosol | 17.19 | 13.54 |
| TraesCS7B01G178300.1 | Wheat | nucleus | 16.84 | 13.48 |
| TraesCS1B01G249300.1 | Wheat | cytosol | 16.49 | 12.88 |
| TraesCS6B01G321300.2 | Wheat | nucleus | 16.84 | 12.87 |
| TraesCS3B01G532600.3 | Wheat | cytosol | 16.84 | 12.87 |
| TraesCS1B01G168200.1 | Wheat | nucleus | 20.35 | 12.83 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 19.3 | 11.68 |
| TraesCS2B01G556700.1 | Wheat | nucleus | 19.3 | 10.81 |
| TraesCS5B01G410100.1 | Wheat | nucleus | 12.63 | 10.26 |
| TraesCS3B01G211700.1 | Wheat | nucleus | 16.14 | 10.15 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G299000.1 | EnsemblPlantsGene:TraesCS7B01G299000 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR44828 |
| PANTHER:PTHR44828:SF2 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| TIGR:cd12384 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr7B:+:535822557..535825338
Molecular Weight (calculated)
30065.4 Da
IEP (calculated)
8.495
GRAVY (calculated)
-0.398
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MMTPQRSPAV MAGGGGGGGG GGGGGGTPAL HYLSGPYGDT TYTKVFVGGL AWETRSEGLR AHFEAYGDIL EAVVITDRAT GRSKGYGFVT FRDPDSARMA
101: CMDPYPVIDG RRANCNLAIL GRPGPAVPFG PIRPVMPYNG GAAVPGGMYV PSPTYQQSPY NYSQALVYPP YGPSTYGPEY LYPQNAYGPY VGQQYVPVYG
201: GPRTVGPAVY PYGQFGQPVP SDHSYSPGYV PGHLLPLSNQ NAANARASAV PQQYPPGAPH PQQQLLLPAR VQQFPPNNVS EQMSG
101: CMDPYPVIDG RRANCNLAIL GRPGPAVPFG PIRPVMPYNG GAAVPGGMYV PSPTYQQSPY NYSQALVYPP YGPSTYGPEY LYPQNAYGPY VGQQYVPVYG
201: GPRTVGPAVY PYGQFGQPVP SDHSYSPGYV PGHLLPLSNQ NAANARASAV PQQYPPGAPH PQQQLLLPAR VQQFPPNNVS EQMSG
001: MAYQPVPGSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RQHFEQYGEI LEAVVIADKN TGRSKGYGFV TFRDPEAARR ACADPTPIID GRRANCNLAS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I2E4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.