Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G53720.1 | Thale cress | cytosol | 14.51 | 46.0 |
| Bra029612.1-P | Field mustard | nucleus | 35.33 | 39.02 |
| CDY24657 | Canola | nucleus | 39.75 | 37.06 |
| CDY05301 | Canola | nucleus | 40.38 | 36.47 |
| CDX74070 | Canola | cytosol | 40.69 | 35.83 |
| CDY08023 | Canola | nucleus | 40.69 | 35.83 |
| Bra001228.1-P | Field mustard | cytosol | 38.49 | 33.7 |
| GSMUA_Achr4P09830_001 | Banana | mitochondrion | 14.83 | 31.13 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 15.46 | 30.82 |
| HORVU6Hr1G070140.3 | Barley | plastid | 14.2 | 28.85 |
| Zm00001d052212_P001 | Maize | nucleus | 14.51 | 28.57 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 15.77 | 28.57 |
| HORVU6Hr1G070150.1 | Barley | plastid | 14.51 | 27.54 |
| AT5G53680.1 | Thale cress | cytosol | 14.51 | 27.22 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 15.14 | 27.12 |
| Os02t0755400-01 | Rice | plastid | 13.88 | 25.0 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 18.61 | 24.48 |
| KRH64318 | Soybean | nucleus | 18.93 | 23.35 |
| KRH53608 | Soybean | nucleus | 17.67 | 22.76 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 16.4 | 22.03 |
| TraesCS4A01G068100.1 | Wheat | nucleus | 17.03 | 21.69 |
| TraesCS4D01G225900.1 | Wheat | nucleus | 17.03 | 21.69 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 17.98 | 21.59 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 16.4 | 21.58 |
| PGSC0003DMT400025900 | Potato | nucleus | 19.24 | 21.25 |
| AT1G33470.1 | Thale cress | cytosol | 16.4 | 21.22 |
| AT1G20880.1 | Thale cress | nucleus | 17.35 | 20.07 |
| HORVU4Hr1G063360.1 | Barley | nucleus | 17.35 | 20.07 |
| TraesCS4B01G225300.1 | Wheat | nucleus | 17.03 | 19.78 |
| TraesCS6D01G258900.4 | Wheat | plastid | 17.67 | 19.44 |
| GSMUA_Achr8P24330_001 | Banana | nucleus, plastid | 17.67 | 19.31 |
| AT1G76460.1 | Thale cress | nucleus | 17.35 | 19.3 |
| TraesCS6B01G306600.1 | Wheat | plastid | 17.35 | 19.3 |
| Os06t0622900-01 | Rice | cytosol, mitochondrion, nucleus | 16.72 | 19.27 |
| AT1G78260.1 | Thale cress | nucleus | 17.35 | 19.16 |
| Os02t0714000-01 | Rice | nucleus, plastid | 17.35 | 19.16 |
| AT3G54770.1 | Thale cress | nucleus | 15.77 | 19.16 |
| TraesCS7A01G398200.1 | Wheat | cytosol, mitochondrion, nucleus | 17.03 | 19.08 |
| TraesCS7B01G299000.1 | Wheat | mitochondrion, nucleus, plastid | 17.03 | 18.95 |
| TraesCS6A01G278300.3 | Wheat | plastid | 17.35 | 18.84 |
| TraesCS7D01G392500.1 | Wheat | cytosol, nucleus, plastid | 17.03 | 18.82 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 16.4 | 18.64 |
| AT1G22330.1 | Thale cress | nucleus | 17.03 | 18.56 |
| OQU85520 | Sorghum | nucleus, plastid | 17.03 | 18.31 |
| EER90058 | Sorghum | plastid | 16.4 | 18.18 |
| HORVU7Hr1G036920.2 | Barley | mitochondrion, nucleus | 17.03 | 18.06 |
| HORVU7Hr1G093450.6 | Barley | nucleus | 16.72 | 18.03 |
| TraesCS7B01G084600.1 | Wheat | nucleus | 16.4 | 17.33 |
| TraesCS7D01G180800.1 | Wheat | nucleus | 16.4 | 17.28 |
| TraesCS7A01G178700.2 | Wheat | nucleus | 16.4 | 17.11 |
| AT2G46780.1 | Thale cress | nucleus | 17.98 | 16.96 |
| HORVU6Hr1G070170.1 | Barley | mitochondrion, nucleus, plastid | 17.35 | 16.57 |
| KXG30724 | Sorghum | plastid | 16.09 | 16.45 |
| HORVU6Hr1G078060.1 | Barley | plastid | 16.09 | 16.14 |
| TraesCS6B01G348100.1 | Wheat | plastid | 15.77 | 16.08 |
| TraesCS6D01G297300.1 | Wheat | plastid | 15.77 | 16.03 |
| Zm00001d018103_P002 | Maize | plasma membrane | 15.77 | 15.72 |
| Zm00001d017829_P002 | Maize | plastid | 16.72 | 15.36 |
| Zm00001d037209_P001 | Maize | plastid | 16.09 | 15.36 |
| OQU76075 | Sorghum | plastid | 16.72 | 15.01 |
| Os06t0220600-01 | Rice | plastid | 16.09 | 14.87 |
| Zm00001d046716_P001 | Maize | nucleus | 16.72 | 14.72 |
| Zm00001d051627_P002 | Maize | plastid | 16.72 | 14.4 |
| AT1G22910.3 | Thale cress | nucleus | 14.83 | 13.54 |
| AT4G14300.1 | Thale cress | nucleus | 14.83 | 11.44 |
| AT1G17640.1 | Thale cress | nucleus | 13.25 | 11.38 |
| AT2G22090.2 | Thale cress | nucleus | 11.99 | 10.95 |
| AT1G58470.2 | Thale cress | cytosol, nucleus, plastid | 12.3 | 10.83 |
| AT2G33410.1 | Thale cress | nucleus | 13.56 | 10.64 |
| AT3G13224.2 | Thale cress | nucleus | 11.67 | 10.34 |
| AT2G41060.3 | Thale cress | nucleus | 14.51 | 10.2 |
| AT3G15010.2 | Thale cress | nucleus | 12.93 | 10.15 |
| TraesCS6A01G318100.1 | Wheat | nucleus | 15.46 | 10.06 |
| AT4G36960.2 | Thale cress | cytosol | 11.67 | 9.76 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 13.88 | 9.71 |
| AT5G55550.10 | Thale cress | nucleus | 15.46 | 9.66 |
| AT4G26650.1 | Thale cress | nucleus | 13.56 | 9.45 |
| AT3G56860.10 | Thale cress | nucleus | 14.2 | 9.41 |
| AT2G22100.1 | Thale cress | nucleus | 11.04 | 9.16 |
| AT3G07810.2 | Thale cress | nucleus | 14.2 | 9.09 |
| AT5G40490.1 | Thale cress | nucleus | 11.04 | 8.27 |
| AT2G19380.1 | Thale cress | nucleus | 11.04 | 5.71 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:819882 | ProteinID:AEE74482.1 | ArrayExpress:AT3G06970 | EnsemblPlantsGene:AT3G06970 |
| RefSeq:AT3G06970 | TAIR:AT3G06970 | RefSeq:AT3G06970-TAIR-G | EnsemblPlants:AT3G06970.1 | TAIR:AT3G06970.1 | Unigene:At.53209 |
| ncoils:Coil | EMBL:DQ446643 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0008150 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_187353.2 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR44374 | PANTHER:PTHR44374:SF3 | UniProt:Q1PES4 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0000D5BC9E | SEG:seg | : | : |
Description
RNA recognition motif-containing protein [Source:UniProtKB/TrEMBL;Acc:Q1PES4]
Coordinates
chr3:-:2199632..2201150
Molecular Weight (calculated)
36512.0 Da
IEP (calculated)
5.115
GRAVY (calculated)
-0.982
Length
317 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQTNNHDTR VTKIFVGNLT WRTTADDLRR YFEQFGQVVD ANVVSETYPG RSKGYGFITF RDYVSTVRAL QNSKPIIDGR TTNCNLASAG AKQNMNHPNL
101: NGSFNYVIPP HQYQQAPQHV IPYCPPHTWN HVWGQYIYMY NNNPCYYYPT QMIHNRSDFM THLAWHQTNR RPVIISTPPR SSVQTESISE TDQELIADVA
201: HHDNEEAVTK SDSDVDQQKA KNVKGKNIGQ DGDIKQDARD QEEKINDQED SIKQDVDEEQ NKISGIEKVV ENQEVKIMCE QKHGTKQDED VTKEFDCGIE
301: VTHQDKRVFE EVDEDTP
101: NGSFNYVIPP HQYQQAPQHV IPYCPPHTWN HVWGQYIYMY NNNPCYYYPT QMIHNRSDFM THLAWHQTNR RPVIISTPPR SSVQTESISE TDQELIADVA
201: HHDNEEAVTK SDSDVDQQKA KNVKGKNIGQ DGDIKQDARD QEEKINDQED SIKQDVDEEQ NKISGIEKVV ENQEVKIMCE QKHGTKQDED VTKEFDCGIE
301: VTHQDKRVFE EVDEDTP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.