Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030265.1-P | Field mustard | nucleus | 69.63 | 72.68 |
| CDY15850 | Canola | nucleus | 70.16 | 72.43 |
| AT5G53720.1 | Thale cress | cytosol | 9.95 | 38.0 |
| AT2G19380.1 | Thale cress | nucleus | 55.76 | 34.75 |
| AT2G22090.2 | Thale cress | nucleus | 23.3 | 25.65 |
| VIT_07s0031g01290.t01 | Wine grape | nucleus | 22.77 | 22.19 |
| AT2G41060.3 | Thale cress | nucleus | 24.08 | 20.4 |
| AT5G53680.1 | Thale cress | cytosol | 8.9 | 20.12 |
| AT3G56860.10 | Thale cress | nucleus | 24.35 | 19.46 |
| Solyc04g011560.2.1 | Tomato | nucleus | 23.82 | 19.36 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 8.64 | 18.86 |
| PGSC0003DMT400016249 | Potato | nucleus | 23.04 | 17.89 |
| AT3G15010.2 | Thale cress | nucleus | 18.32 | 17.33 |
| AT1G33470.1 | Thale cress | cytosol | 10.21 | 15.92 |
| AT1G76460.1 | Thale cress | nucleus | 11.52 | 15.44 |
| AT1G20880.1 | Thale cress | nucleus | 10.99 | 15.33 |
| AT3G54770.1 | Thale cress | nucleus | 9.69 | 14.18 |
| AT5G40490.1 | Thale cress | nucleus | 14.92 | 13.48 |
| AT2G33410.1 | Thale cress | nucleus | 14.14 | 13.37 |
| AT1G78260.1 | Thale cress | nucleus | 9.69 | 12.89 |
| AT3G13224.2 | Thale cress | nucleus | 11.78 | 12.57 |
| AT1G17640.1 | Thale cress | nucleus | 12.04 | 12.47 |
| AT4G36960.2 | Thale cress | cytosol | 12.3 | 12.4 |
| AT2G46780.1 | Thale cress | nucleus | 10.73 | 12.2 |
| AT4G14300.1 | Thale cress | nucleus | 13.09 | 12.17 |
| AT1G22330.1 | Thale cress | nucleus | 9.16 | 12.03 |
| AT3G07810.2 | Thale cress | nucleus | 14.66 | 11.31 |
| AT3G06970.1 | Thale cress | nucleus | 9.16 | 11.04 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 12.83 | 10.82 |
| AT4G26650.1 | Thale cress | nucleus | 12.83 | 10.77 |
| AT1G22910.3 | Thale cress | nucleus | 9.69 | 10.66 |
| AT1G58470.2 | Thale cress | cytosol, nucleus, plastid | 9.69 | 10.28 |
| AT5G55550.10 | Thale cress | nucleus | 12.83 | 9.66 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:816745 | ProteinID:AAD25814.2 | ProteinID:AEC07264.1 | ArrayExpress:AT2G22100 |
| EnsemblPlantsGene:AT2G22100 | RefSeq:AT2G22100 | TAIR:AT2G22100 | RefSeq:AT2G22100-TAIR-G | EnsemblPlants:AT2G22100.1 | TAIR:AT2G22100.1 |
| EMBL:AY088233 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008150 | InterPro:IPR000504 |
| InterPro:IPR012677 | RefSeq:NP_565526.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PFscan:PS50102 | PANTHER:PTHR44578 | UniProt:Q9SHZ5 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00000A0120 | SEG:seg | : |
Description
UBA1BUBP1-associated proteins 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9SHZ5]
Coordinates
chr2:-:9391554..9393594
Molecular Weight (calculated)
42885.9 Da
IEP (calculated)
9.737
GRAVY (calculated)
-1.035
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKEGEERKK EKKEKKERKE RKRREAEELA VREKKISKKH KSKSKEEEKP EKSKKKSKKY EEVEEEEKSP SPSPSPKKSK ESKKKHKRSS DESEEIVDSK
101: PVTVPIVTIE SDSDFEFDKE DIKNLLESYS KEELINLIYK TAEKGSKLIS AVFESADRDS SQRNIFVRGL GWDTTHENLK AAFEVYGEIT ECSVVMDKDT
201: GRAKGFGFVL FKTRKGARAA LKNPEKRMYN RTVSCLPARP FNSGKPREQQ QPVESVKIDL SHTGNQSEMA LPGIDLGHGL DKGHQQQQNM SMYAGQNMPF
301: YGHSQPPPGF NPMYGAMMGN PMVAGLQNYR MFGSGMMNQG PMMPPNHMGM VGQYVGDGNV NGVGAGAGAG AGFDGERAWY LR
101: PVTVPIVTIE SDSDFEFDKE DIKNLLESYS KEELINLIYK TAEKGSKLIS AVFESADRDS SQRNIFVRGL GWDTTHENLK AAFEVYGEIT ECSVVMDKDT
201: GRAKGFGFVL FKTRKGARAA LKNPEKRMYN RTVSCLPARP FNSGKPREQQ QPVESVKIDL SHTGNQSEMA LPGIDLGHGL DKGHQQQQNM SMYAGQNMPF
301: YGHSQPPPGF NPMYGAMMGN PMVAGLQNYR MFGSGMMNQG PMMPPNHMGM VGQYVGDGNV NGVGAGAGAG AGFDGERAWY LR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.