Skip to main content
crop-pal logo
Tomato
Search for another protein from :
Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • plastid 2
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:nucleus
Plant-mPloc:nucleus, plastid
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
 nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc04g011560.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G22090.2 Solyc04g011560.2.1 AT2G22090.2 12024044
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400016249 Potato nucleus 87.66 83.74
VIT_07s0031g01290.t01 Wine grape nucleus 39.79 47.7
CDY13782 Canola nucleus 25.96 39.74
Bra031230.1-P Field mustard nucleus 25.96 39.74
CDX76950 Canola nucleus 25.96 39.61
AT2G22090.2 Thale cress nucleus 27.02 36.6
Solyc10g081330.1.1 Tomato nucleus 30.85 34.77
Solyc01g008970.2.1 Tomato nucleus 25.96 32.45
Solyc12g014210.1.1 Tomato nucleus 21.06 29.55
Solyc02g021560.2.1 Tomato nucleus 25.96 28.31
Bra030265.1-P Field mustard nucleus 19.57 25.14
CDY15850 Canola nucleus 19.57 24.86
AT2G22100.1 Thale cress nucleus 19.36 23.82
Solyc07g045240.2.1 Tomato nucleus 15.74 21.57
Solyc06g062740.1.1 Tomato cytosol 8.72 20.81
Solyc03g121710.2.1 Tomato nucleus 11.7 20.45
Solyc04g082770.2.1 Tomato cytosol, extracellular, nucleus, plastid 10.21 19.92
Solyc11g044470.1.1 Tomato mitochondrion, nucleus, plastid 10.85 19.54
Solyc04g049920.2.1 Tomato nucleus 9.79 19.09
Solyc04g077520.2.1 Tomato nucleus 13.83 19.06
Solyc02g082270.2.1 Tomato nucleus 11.28 18.79
Solyc02g093340.2.1 Tomato nucleus 15.32 18.51
Solyc06g062730.1.1 Tomato nucleus 14.04 17.98
Solyc04g014820.2.1 Tomato cytosol 9.79 17.16
Solyc02g090910.2.1 Tomato nucleus 13.19 16.49
Solyc04g074310.2.1 Tomato nucleus 10.0 16.04
Solyc12g035280.1.1 Tomato cytosol, nucleus, plastid 12.13 15.36
Solyc09g072790.2.1 Tomato nucleus 12.77 15.23
Solyc09g090520.2.1 Tomato nucleus 15.11 14.95
Solyc07g048030.2.1 Tomato nucleus 13.62 14.65
Solyc12g006180.1.1 Tomato nucleus 13.62 14.61
Solyc10g006050.2.1 Tomato nucleus 13.4 14.55
Solyc03g005680.2.1 Tomato nucleus 13.19 14.52
AT2G19380.1 Thale cress nucleus 17.66 13.54
Solyc12g014600.1.1 Tomato nucleus 12.55 13.5
Solyc11g012470.1.1 Tomato nucleus 11.7 12.85
Solyc02g064540.1.1 Tomato nucleus 9.15 11.62
Protein Annotations
Gene3D:3.30.70.330MapMan:35.1GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0005488
InterPro:IPR000504InterPro:IPR012677UniProt:K4BPK9InterPro:Nucleotide-bd_a/b_plait_sfPFAM:PF00076PFscan:PS50102
PANTHER:PTHR44578PANTHER:PTHR44578:SF5InterPro:RBD_domain_sfInterPro:RRM_domSMART:SM00360SUPFAM:SSF54928
EnsemblPlantsGene:Solyc04g011560.2EnsemblPlants:Solyc04g011560.2.1UniParc:UPI0002765FEBSEG:seg::
Description
No Description!
Coordinates
chr4:-:3985755..3989214
Molecular Weight (calculated)
48225.5 Da
IEP (calculated)
10.009
GRAVY (calculated)
-0.289
Length
470 amino acids
Sequence
(BLAST)
001: MAANNEVKKR KLGKQAADSI ATPSKINKNQ QPKTPKSDSS NPPNSNSGSD AESLPLKIQK LLEPYSKDQL VTLAVDTAVV LPAFYRLIQS HADKDISHRK
101: IFVYGLPRDT TRPVLLAVFE PYGEIEECNL VMDHATGNAK GYAFVLFKTR KSAAKALKEP QKMINNRLAS CKLASMKETA VSGTNEIGNR KIYVSNVPKK
201: VNSEKLRSFF AKFGEIEAGP MGFDPSTGKS KGYALFVYKT VEAAKKCLEK SSKIFEGRQL HCKKAAEGKI GGGAASITTE AVQQPLLAMP PGQGVYAPVA
301: AGHSMGMLGQ NTDVPMMNPF YGGALANPYG AYGNPFAGVG GFGQQMGGGM GMAAGYGGVL DSVGGGVSGL GAYGGAGSST GGSTGVLGAY GSVVSSTGGS
401: TGGLGAYGGV GSRTGGSTGG LGPYGGVGGS TGGSTGGVAP GLLQLYQNNQ AGQPSSAKYP GSSGYPPHFR
Best Arabidopsis Sequence Match ( AT2G41060.2 )
(BLAST)
001: MTKKRKLESE SNETSEPTEK QQQQCEKEDP EIRNVDNQRD DDEQVVEQDT LKEMHEEEAK GEDNIEAETS SGSGNQGNED DDEEEPIEDL LEPFSKDQLL
101: ILLKEAAERH RDVANRIRIV ADEDLVHRKI FVHGLGWDTK ADSLIDAFKQ YGEIEDCKCV VDKVSGQSKG YGFILFKSRS GARNALKQPQ KKIGTRMTAC
201: QLASIGPVQG NPVVAPAQHF NPENVQRKIY VSNVSADIDP QKLLEFFSRF GEIEEGPLGL DKATGRPKGF ALFVYRSLES AKKALEEPHK TFEGHVLHCH
301: KANDGPKQVK QHQHNHNSHN QNSRYQRNDN NGYGAPGGHG HFIAGNNQAV QAFNPAIGQA LTALLASQGA GLGLNQAFGQ ALLGTLGTAS PGAVGGMPSG
401: YGTQANISPG VYPGYGAQAG YQGGYQTQQP GQGGAGRGQH GAGYGGPYMG R
Arabidopsis Description
UBA2BUBP1-associated protein 2B [Source:UniProtKB/Swiss-Prot;Acc:O80678]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.