Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400060554 | Potato | nucleus | 95.9 | 54.68 |
| Solyc11g012470.1.1 | Tomato | nucleus | 76.12 | 47.66 |
| Solyc10g006050.2.1 | Tomato | nucleus | 66.04 | 40.88 |
| Solyc07g048030.2.1 | Tomato | nucleus | 65.67 | 40.27 |
| Solyc12g014600.1.1 | Tomato | nucleus | 64.55 | 39.59 |
| Solyc12g006180.1.1 | Tomato | nucleus | 64.18 | 39.27 |
| GSMUA_Achr10P... | Banana | nucleus | 64.18 | 39.09 |
| GSMUA_Achr10P... | Banana | nucleus | 65.67 | 38.26 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 59.33 | 35.97 |
| Os11t0637700-01 | Rice | plasma membrane | 61.19 | 35.12 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 65.3 | 35.0 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 60.07 | 34.77 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 60.07 | 34.77 |
| TraesCS4D01G152200.1 | Wheat | nucleus | 60.07 | 34.77 |
| TraesCSU01G068500.1 | Wheat | nucleus | 59.7 | 34.56 |
| EER97452 | Sorghum | nucleus | 59.33 | 33.76 |
| Os07t0584500-01 | Rice | nucleus | 58.58 | 33.26 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 58.21 | 33.12 |
| Zm00001d006704_P002 | Maize | nucleus | 59.7 | 33.06 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 57.84 | 32.98 |
| Zm00001d007772_P001 | Maize | nucleus | 54.48 | 32.52 |
| EER98147 | Sorghum | nucleus | 54.1 | 32.01 |
| EER96020 | Sorghum | nucleus | 54.1 | 31.87 |
| Zm00001d019079_P001 | Maize | cytosol | 52.99 | 31.7 |
| Zm00001d019084_P002 | Maize | nucleus | 50.75 | 29.96 |
| Solyc03g121710.2.1 | Tomato | nucleus | 29.48 | 29.37 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 58.96 | 29.21 |
| TraesCS2A01G190400.1 | Wheat | plastid | 57.84 | 29.19 |
| Zm00001d019086_P001 | Maize | nucleus | 57.46 | 28.95 |
| OQU83904 | Sorghum | nucleus | 46.64 | 27.78 |
| Solyc09g072790.2.1 | Tomato | nucleus | 39.18 | 26.65 |
| Solyc04g077520.2.1 | Tomato | nucleus | 33.58 | 26.39 |
| Solyc06g062740.1.1 | Tomato | cytosol | 17.91 | 24.37 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 61.19 | 24.15 |
| Solyc07g045240.2.1 | Tomato | nucleus | 30.6 | 23.91 |
| Solyc03g005680.2.1 | Tomato | nucleus | 36.94 | 23.18 |
| Solyc09g090520.2.1 | Tomato | nucleus | 39.55 | 22.32 |
| Solyc02g093340.2.1 | Tomato | nucleus | 29.85 | 20.57 |
| Solyc06g062730.1.1 | Tomato | nucleus | 27.61 | 20.16 |
| Solyc02g064540.1.1 | Tomato | nucleus | 25.75 | 18.65 |
| Solyc02g090910.2.1 | Tomato | nucleus | 23.51 | 16.76 |
| Solyc12g035280.1.1 | Tomato | cytosol, nucleus, plastid | 20.9 | 15.09 |
| Solyc04g049920.2.1 | Tomato | nucleus | 10.82 | 12.03 |
| Solyc01g008970.2.1 | Tomato | nucleus | 16.04 | 11.44 |
| Solyc10g081330.1.1 | Tomato | nucleus | 17.54 | 11.27 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 10.07 | 11.2 |
| Solyc02g021560.2.1 | Tomato | nucleus | 17.91 | 11.14 |
| Solyc11g044470.1.1 | Tomato | mitochondrion, nucleus, plastid | 10.82 | 11.11 |
| Solyc12g014210.1.1 | Tomato | nucleus | 13.81 | 11.04 |
| Solyc02g082270.2.1 | Tomato | nucleus | 10.45 | 9.93 |
| Solyc04g011560.2.1 | Tomato | nucleus | 17.16 | 9.79 |
| Solyc04g074310.2.1 | Tomato | nucleus | 8.96 | 8.19 |
Protein Annotations
| EnsemblPlants:Solyc04g014820.2.1 | EnsemblPlantsGene:Solyc04g014820.2 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:DAZAP1_RRM2 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR44291 | PANTHER:PTHR44291:SF2 | PFAM:PF00076 | PFscan:PS50102 | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI00027667E3 | UniProt:K4BPY5 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr4:-:5055498..5059899
Molecular Weight (calculated)
29129.9 Da
IEP (calculated)
9.736
GRAVY (calculated)
-0.511
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MKDRITGRAR GFGFVVFADP SIAEKVVKEK HIIDGRTVEA KKAVPRDDQH VNRNGSIQGS PGPARTRKIF VGGLASSVTE SEFKKYFDQF GTITDVVVMY
101: DHNTQRPRGF GFITYDSEEA VDSVLYKIFH ELNGKRVEVK RAVPKELSRG PTQSQLVGRY NHGMNRVNNF LNVYTQGYSP SGAGYGQNAR SNADAKSSYA
201: PTQGVHANAF GDFYGTASSP IFEDSTWRAS SPELDSAGAL SYGLGSADSL SYVGGYSVAN RSTRGIAA
101: DHNTQRPRGF GFITYDSEEA VDSVLYKIFH ELNGKRVEVK RAVPKELSRG PTQSQLVGRY NHGMNRVNNF LNVYTQGYSP SGAGYGQNAR SNADAKSSYA
201: PTQGVHANAF GDFYGTASSP IFEDSTWRAS SPELDSAGAL SYGLGSADSL SYVGGYSVAN RSTRGIAA
001: MQSDNGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPAVA EIVITEKHNI DGRLVEAKKA VPRDDQNMVN RSNSSSIQGS
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JFN7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.