Factsheet for Solyc09g090520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g111780.2.1
Solyc03g123840.2.1
Solyc04g056280.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33410.1	Solyc03g123840.2.1	AT3G21215.1	21798944
AT4G14300.1	Solyc01g111780.2.1	AT2G16950.1	14756317
AT4G14300.1	Solyc04g056280.2.1	AT5G10270.1	12678503

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400044195	Potato	nucleus	99.16	99.16
Solyc03g005680.2.1	Tomato	nucleus	74.53	82.9
VIT_05s0049g01660.t01	Wine grape	nucleus	72.21	73.92
KRH34534	Soybean	nucleus	69.26	69.85
KRG92276	Soybean	endoplasmic reticulum	68.63	68.49
CDY12068	Canola	nucleus	49.89	66.2
AT4G14300.1	Thale cress	nucleus	57.26	66.18
AT2G33410.1	Thale cress	nucleus	55.79	65.59
KRH07772	Soybean	cytosol	13.47	65.31
Bra010757.1-P	Field mustard	nucleus	52.42	65.18
CDX90262	Canola	nucleus	52.21	64.92
CDY67299	Canola	nucleus	51.79	64.57
CDX79527	Canola	nucleus	55.16	64.53
Bra005496.1-P	Field mustard	nucleus	50.95	64.36
CDY23739	Canola	nucleus	51.79	64.23
CDY17173	Canola	nucleus	50.95	64.19
Bra021850.1-P	Field mustard	nucleus	49.47	64.03
CDY37724	Canola	nucleus	43.16	63.47
CDX84689	Canola	nucleus	54.32	63.24
Bra022938.1-P	Field mustard	nucleus	54.11	62.99
GSMUA_Achr5P17690_001	Banana	nucleus	50.32	59.16
Solyc09g072790.2.1	Tomato	nucleus	35.16	42.39
Solyc06g062740.1.1	Tomato	cytosol	16.84	40.61
Solyc03g121710.2.1	Tomato	nucleus	22.95	40.52
Solyc04g014820.2.1	Tomato	cytosol	22.32	39.55
Solyc04g077520.2.1	Tomato	nucleus	28.21	39.3
Solyc07g045240.2.1	Tomato	nucleus	28.21	39.07
Solyc07g048030.2.1	Tomato	nucleus	34.95	37.99
Solyc02g093340.2.1	Tomato	nucleus	30.53	37.28
Solyc10g006050.2.1	Tomato	nucleus	33.47	36.72
Solyc12g014600.1.1	Tomato	nucleus	33.26	36.16
Solyc11g012470.1.1	Tomato	nucleus	32.21	35.75
Solyc12g006180.1.1	Tomato	nucleus	32.84	35.62
Solyc06g062730.1.1	Tomato	nucleus	25.68	33.24
Solyc02g090910.2.1	Tomato	nucleus	21.89	27.66
Solyc11g044470.1.1	Tomato	mitochondrion, nucleus, plastid	14.74	26.82
Solyc12g035280.1.1	Tomato	cytosol, nucleus, plastid	20.84	26.68
Solyc02g064540.1.1	Tomato	nucleus	18.95	24.32
Solyc04g082770.2.1	Tomato	cytosol, extracellular, nucleus, plastid	11.16	21.99
Solyc04g049920.2.1	Tomato	nucleus	11.16	21.99
Solyc02g021560.2.1	Tomato	nucleus	18.32	20.19
Solyc02g082270.2.1	Tomato	nucleus	11.37	19.15
Solyc04g074310.2.1	Tomato	nucleus	11.16	18.09
Solyc12g014210.1.1	Tomato	nucleus	11.37	16.12
Solyc04g011560.2.1	Tomato	nucleus	14.95	15.11
Solyc10g081330.1.1	Tomato	nucleus	13.05	14.87
Solyc01g008970.2.1	Tomato	nucleus	10.74	13.56

Protein Annotations

EnsemblPlants:Solyc09g090520.2.1	EnsemblPlantsGene:Solyc09g090520.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:DAZAP1_RRM2	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44291	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000276AD84	UniProt:K4CW78	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr9:-:70022667..70025876

Molecular Weight (calculated)

47794.9 Da

IEP (calculated)

6.812

GRAVY (calculated)

-0.741

Length

475 amino acids

Sequence
(BLAST)

001: MDSDQGKLFI GGISWETTEE KLKEYFQGYG DVLQTVVMRD KISGKPRGFG FVVFADPNVL DRVLQDEHVI DGRTVDAKRA LSREEQQGSK SGNTNSARNF
101: GGGGNTRTKK IFVGGLPPTL TEEGFRQYFE SFGNVTDVVI MYDQQTNRPR GFGFISFDSE DAVDRVLQKP FHDLNGKQVE VKKALPKDAN PGAGGRSMGG
201: GGGSGMGGGS YQGYGGSGNN PSSYDSRMDS NRYMQTQNAG AGYPYGSSGY GTPGYGYGPS NNGMGYGGYG SYGGANPGYG GANPGYGAAA VAAAYGNPNA
301: ASAGYGSGPA GGPRSTWGSQ GPSGYGNMGY GNAPWGAANA GGGGGGPASG GSGQSPTGTA GYGNQGYGYG GYAGNEGAYG NQSGYGAVGR ASGAPSGNSP
401: VGGGAAGDMQ SGAGGYMNSG YADASGNSSY GNSAWRSDNS QSSGNYGAPP NGAHGGQVGY GGGYGGAPSR QAQQQ

Best Arabidopsis Sequence Match ( AT4G14300.2 )
(BLAST)

001: MDSDQGKLFV GGISWETDED KLREHFTNYG EVSQAIVMRD KLTGRPRGFG FVIFSDPSVL DRVLQEKHSI DTREVDVKRA MSREEQQVSG RTGNLNTSRS
101: SGGDAYNKTK KIFVGGLPPT LTDEEFRQYF EVYGPVTDVA IMYDQATNRP RGFGFVSFDS EDAVDSVLHK TFHDLSGKQV EVKRALPKDA NPGGGGRSMG
201: GGGSGGYQGY GGNESSYDGR MDSNRFLQHQ SVGNGLPSYG SSGYGAGYGN GSNGAGYGAY GGYTGSAGGY GAGATAGYGA TNIPGAGYGS STGVAPRNSW
301: DTPASSGYGN PGYGSGAAHS GYGVPGAAPP TQSPSGYSNQ GYGYGGYSGS DSGYGNQAAY GVVGGRPSGG GSNNPGSGGY MGGGYGDGSW RSDPSQGYGG
401: GYNDGQGRQG Q

Arabidopsis Description

RNP1Heterogeneous nuclear ribonucleoprotein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W034]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.