Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G33410.1 | CDY12358 | AT1G31750.1 | 21798944 |
| AT2G33410.1 | CDY27132 | AT1G31750.1 | 21798944 |
| AT2G33410.1 | CDY06428 | AT3G21215.1 | 21798944 |
| AT2G33410.1 | CDY27533 | AT3G21215.1 | 21798944 |
| AT2G33410.1 | CDY37307 | AT3G21215.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021850.1-P | Field mustard | nucleus | 91.91 | 95.91 |
| CDY37724 | Canola | nucleus | 80.42 | 95.36 |
| CDX79527 | Canola | nucleus | 91.12 | 85.96 |
| AT2G33410.1 | Thale cress | nucleus | 90.34 | 85.64 |
| CDY67299 | Canola | nucleus | 84.86 | 85.3 |
| CDX84689 | Canola | nucleus | 90.08 | 84.56 |
| CDY17173 | Canola | nucleus | 83.03 | 84.35 |
| CDY12068 | Canola | nucleus | 57.7 | 61.73 |
| CDX90262 | Canola | nucleus | 59.01 | 59.16 |
| KRH07772 | Soybean | cytosol | 14.36 | 56.12 |
| VIT_05s0049g01660.t01 | Wine grape | nucleus | 67.36 | 55.6 |
| Solyc03g005680.2.1 | Tomato | nucleus | 57.96 | 51.99 |
| Solyc09g090520.2.1 | Tomato | nucleus | 64.23 | 51.79 |
| PGSC0003DMT400035000 | Potato | nucleus | 59.53 | 51.58 |
| PGSC0003DMT400044195 | Potato | nucleus | 63.97 | 51.58 |
| KRG92276 | Soybean | endoplasmic reticulum | 63.71 | 51.26 |
| KRH34534 | Soybean | nucleus | 62.92 | 51.17 |
| TraesCS1B01G168200.1 | Wheat | nucleus | 55.87 | 47.35 |
| KXG38359 | Sorghum | nucleus | 55.87 | 47.24 |
| TraesCS1A01G150600.1 | Wheat | nucleus | 55.87 | 47.14 |
| TraesCS1D01G147600.1 | Wheat | nucleus | 55.87 | 47.14 |
| Zm00001d032739_P001 | Maize | nucleus | 54.05 | 46.73 |
| GSMUA_Achr5P17690_001 | Banana | nucleus | 47.0 | 44.55 |
| Zm00001d014058_P002 | Maize | plastid | 54.31 | 43.15 |
| HORVU1Hr1G039790.1 | Barley | nucleus | 55.61 | 41.76 |
| CDY41059 | Canola | nucleus | 38.12 | 34.19 |
| CDX94301 | Canola | nucleus | 39.16 | 33.94 |
| CDY07975 | Canola | nucleus | 41.51 | 33.76 |
| CDY46690 | Canola | nucleus | 37.6 | 33.64 |
| CDX74030 | Canola | nucleus | 41.25 | 33.47 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 36.03 | 33.25 |
| CDX77783 | Canola | nucleus | 36.55 | 32.94 |
| CDY66272 | Canola | nucleus | 42.04 | 32.92 |
| CDY26229 | Canola | nucleus | 31.85 | 32.88 |
| CDY50131 | Canola | nucleus | 32.64 | 32.72 |
| CDX92807 | Canola | nucleus | 38.38 | 32.67 |
| CDX89316 | Canola | endoplasmic reticulum | 38.12 | 32.66 |
| CDY36753 | Canola | nucleus | 37.08 | 32.64 |
| CDY11989 | Canola | nucleus | 36.81 | 32.64 |
| CDY24201 | Canola | nucleus | 30.81 | 32.6 |
| CDY48318 | Canola | nucleus | 31.59 | 32.53 |
| CDY22136 | Canola | nucleus | 41.25 | 32.51 |
| CDY46689 | Canola | nucleus | 39.16 | 32.4 |
| CDY35966 | Canola | nucleus | 41.78 | 32.39 |
| CDY43360 | Canola | nucleus | 30.55 | 32.32 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 32.64 | 30.41 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 27.68 | 29.2 |
| CDY28918 | Canola | mitochondrion | 36.81 | 29.13 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 26.11 | 28.9 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 27.15 | 28.57 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 26.37 | 27.82 |
| CDX75170 | Canola | extracellular | 11.75 | 27.61 |
| CDY69852 | Canola | cytosol | 25.85 | 25.92 |
| CDY25957 | Canola | nucleus | 37.34 | 25.86 |
| CDY42724 | Canola | cytosol | 25.59 | 25.86 |
| CDY51790 | Canola | cytosol | 7.05 | 25.23 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 7.31 | 25.0 |
| CDY36357 | Canola | nucleus | 32.64 | 23.06 |
| CDY42577 | Canola | nucleus | 32.64 | 22.94 |
| CDX69279 | Canola | nucleus | 13.58 | 22.03 |
| CDY31859 | Canola | nucleus | 13.58 | 21.58 |
| CDY33653 | Canola | nucleus | 14.1 | 21.34 |
| CDY31508 | Canola | nucleus | 13.84 | 21.2 |
| CDX73279 | Canola | cytosol | 13.32 | 21.07 |
| CDY40554 | Canola | nucleus | 36.03 | 21.04 |
| CDX96615 | Canola | nucleus | 13.84 | 21.03 |
| CDY69197 | Canola | nucleus | 12.27 | 20.89 |
| CDY01349 | Canola | nucleus | 13.05 | 20.75 |
| CDY04769 | Canola | nucleus | 12.79 | 20.68 |
| CDY29496 | Canola | nucleus | 13.58 | 19.92 |
| CDX88283 | Canola | nucleus | 14.36 | 19.64 |
| CDY02889 | Canola | nucleus | 10.97 | 19.35 |
| CDY24106 | Canola | nucleus | 20.63 | 19.13 |
| CDY25759 | Canola | nucleus | 12.27 | 18.88 |
| CDY26001 | Canola | nucleus | 19.84 | 18.67 |
| CDY55846 | Canola | nucleus | 19.32 | 18.45 |
| CDY41556 | Canola | nucleus | 13.84 | 18.28 |
| CDY25867 | Canola | nucleus | 18.8 | 17.78 |
| CDX73451 | Canola | cytosol | 11.23 | 17.2 |
| CDY27523 | Canola | nucleus | 14.36 | 17.03 |
| CDY48016 | Canola | nucleus | 14.36 | 16.87 |
| CDX80046 | Canola | nucleus | 13.84 | 16.77 |
| CDY41557 | Canola | nucleus | 13.84 | 16.77 |
| CDX87594 | Canola | nucleus | 13.84 | 16.56 |
| CDY64698 | Canola | nucleus | 11.23 | 16.48 |
| CDX76950 | Canola | nucleus | 13.05 | 16.23 |
| CDX78261 | Canola | nucleus | 10.97 | 16.22 |
| CDX69277 | Canola | mitochondrion | 7.83 | 16.13 |
| CDX87460 | Canola | nucleus | 11.75 | 15.79 |
| CDY13782 | Canola | nucleus | 12.53 | 15.64 |
| CDX68024 | Canola | nucleus | 11.49 | 15.55 |
| CDX88432 | Canola | nucleus | 11.49 | 15.49 |
| CDY27186 | Canola | nucleus | 18.02 | 15.37 |
| CDY21356 | Canola | nucleus | 11.49 | 15.17 |
| CDX72106 | Canola | nucleus | 18.02 | 15.16 |
| CDX79253 | Canola | nucleus | 10.97 | 15.0 |
| CDY67263 | Canola | nucleus | 12.79 | 14.94 |
| CDY06947 | Canola | nucleus | 16.71 | 14.88 |
| CDY46642 | Canola | nucleus | 11.23 | 14.88 |
| CDY57580 | Canola | nucleus | 16.97 | 14.67 |
| CDY21399 | Canola | mitochondrion | 5.48 | 14.48 |
| CDY13339 | Canola | mitochondrion | 6.27 | 14.29 |
| CDX76015 | Canola | nucleus | 11.23 | 14.1 |
| CDY08023 | Canola | nucleus | 12.79 | 13.61 |
| CDY24657 | Canola | nucleus | 12.01 | 13.53 |
| CDY05301 | Canola | nucleus | 12.01 | 13.11 |
| CDX74070 | Canola | cytosol | 12.27 | 13.06 |
| CDY00446 | Canola | nucleus | 11.49 | 12.94 |
| CDY47382 | Canola | golgi, plastid | 13.32 | 12.26 |
| CDY15850 | Canola | nucleus | 11.49 | 11.89 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078GEH9 | UniProt:A0A078GEH9 | EnsemblPlants:CDY23739 | ProteinID:CDY23739 |
| ProteinID:CDY23739.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00024069001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44291 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EF3F85 | SEG:seg |
Description
BnaC04g43830DBnaC04g43830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GEH9]
Coordinates
chrLK032148:-:140159..141785
Molecular Weight (calculated)
39031.6 Da
IEP (calculated)
6.368
GRAVY (calculated)
-0.569
Length
383 amino acids
Sequence
(BLAST)
(BLAST)
001: MESDQGKLFI GGISWDTDEN LLREYFSNYG EVLQVTVMRE KATGRPRGFG FVSFSDPAVI DRVLQSKHHI DNRDVDVKRA MSREEQSPGG SRPGGSFNAA
101: SRSFDSGANV RTKKIFVGGL PPALTSDEFR AYFETYGPVS DAVIMIDQTT QRPRGFGFVS FDSEDSVDLV LHKTFHDLNG KQVEVKRALP KDANPGVVGG
201: GGGGGFSGYG GGGYEGRVDS SRYMPPQNAG SGYPPYGGSG YGTTGYGYGS NGVGYGGFGG YGNPSGAPYG NPGVPGAGFG SGPRSSWGGQ APSGYGNLGY
301: GNAPAAPWGG SGGPGSAVMG QGGASAGYGY APSGYGAIGG RPNSLGGGYA DVSDGSGGYG NHQGNGQGGY GGGYGSGNQA LQQ
101: SRSFDSGANV RTKKIFVGGL PPALTSDEFR AYFETYGPVS DAVIMIDQTT QRPRGFGFVS FDSEDSVDLV LHKTFHDLNG KQVEVKRALP KDANPGVVGG
201: GGGGGFSGYG GGGYEGRVDS SRYMPPQNAG SGYPPYGGSG YGTTGYGYGS NGVGYGGFGG YGNPSGAPYG NPGVPGAGFG SGPRSSWGGQ APSGYGNLGY
301: GNAPAAPWGG SGGPGSAVMG QGGASAGYGY APSGYGAIGG RPNSLGGGYA DVSDGSGGYG NHQGNGQGGY GGGYGSGNQA LQQ
001: MESDQGKLFI GGISWDTDEN LLREYFSNFG EVLQVTVMRE KATGRPRGFG FVAFSDPAVI DRVLQDKHHI DNRDVDVKRA MSREEQSPAG RSGTFNASRN
101: FDSGANVRTK KIFVGGLPPA LTSDEFRAYF ETYGPVSDAV IMIDQTTQRP RGFGFVSFDS EDSVDLVLHK TFHDLNGKQV EVKRALPKDA NPGIASGGGR
201: GSGGAGGFPG YGGSGGSGYE GRVDSNRYMQ PQNTGSGYPP YGGSGYGTGY GYGSNGVGYG GFGGYGNPAG APYGNPSVPG AGFGSGPRSS WGAQAPSGYG
301: NVGYGNAAPW GGSGGPGSAV MGQAGASAGY GSQGYGYGGN DSSYGTPSAY GAVGGRSGNM PNNHGGGGYA DALDGSGGYG NHQGNNGQAG YGGGYGSGRQ
401: AQQQ
101: FDSGANVRTK KIFVGGLPPA LTSDEFRAYF ETYGPVSDAV IMIDQTTQRP RGFGFVSFDS EDSVDLVLHK TFHDLNGKQV EVKRALPKDA NPGIASGGGR
201: GSGGAGGFPG YGGSGGSGYE GRVDSNRYMQ PQNTGSGYPP YGGSGYGTGY GYGSNGVGYG GFGGYGNPAG APYGNPSVPG AGFGSGPRSS WGAQAPSGYG
301: NVGYGNAAPW GGSGGPGSAV MGQAGASAGY GSQGYGYGGN DSSYGTPSAY GAVGGRSGNM PNNHGGGGYA DALDGSGGYG NHQGNNGQAG YGGGYGSGRQ
401: AQQQ
Arabidopsis Description
Putative RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:O22791]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.