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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra028973.1-P Field mustard nucleus 97.47 97.92
CDY11989 Canola nucleus 95.4 96.06
AT5G55550.10 Thale cress nucleus 83.45 71.6
CDX92807 Canola nucleus 72.41 70.0
CDY46689 Canola nucleus 73.33 68.9
CDX94301 Canola nucleus 69.43 68.33
CDY46690 Canola nucleus 66.67 67.76
CDX89316 Canola endoplasmic reticulum 68.05 66.22
VIT_19s0090g01660.t01 Wine grape nucleus 56.55 51.46
KRH14284 Soybean nucleus 56.32 51.26
KRH73860 Soybean nucleus 55.86 50.94
PGSC0003DMT400037271 Potato nucleus 54.71 50.64
PGSC0003DMT400076643 Potato nucleus 55.17 50.63
KRG98573 Soybean nucleus 54.71 49.69
KRH46297 Soybean nucleus 54.71 49.69
GSMUA_Achr10P... Banana nucleus 49.89 49.32
GSMUA_Achr10P... Banana nucleus 51.26 48.48
Solyc10g006050.2.1 Tomato nucleus 48.05 48.27
Solyc12g014600.1.1 Tomato nucleus 47.59 47.37
GSMUA_Achr4P33100_001 Banana nucleus 47.82 47.06
HORVU0Hr1G008280.1 Barley nucleus 48.74 45.79
TraesCS4A01G150600.1 Wheat nucleus 48.74 45.79
TraesCS4D01G152200.1 Wheat nucleus 48.74 45.79
GSMUA_Achr6P10970_001 Banana nucleus 52.41 45.6
TraesCSU01G068500.1 Wheat nucleus 48.51 45.57
Os11t0637700-01 Rice plasma membrane 48.51 45.18
CDY07975 Canola nucleus 48.74 45.01
CDX74030 Canola nucleus 48.51 44.7
Zm00001d007772_P001 Maize nucleus 45.98 44.54
TraesCS2D01G197500.2 Wheat nucleus 47.82 44.26
Zm00001d019079_P001 Maize cytosol 45.52 44.2
CDY66272 Canola nucleus 49.66 44.17
TraesCS2B01G216600.2 Wheat cytosol 47.82 44.16
Os07t0584500-01 Rice nucleus 47.59 43.86
CDY22136 Canola nucleus 48.74 43.62
EER97452 Sorghum nucleus 47.13 43.52
CDY35966 Canola nucleus 49.43 43.52
EER98147 Sorghum nucleus 45.29 43.49
CDY41059 Canola nucleus 42.53 43.33
EER96020 Sorghum nucleus 45.29 43.3
Zm00001d019084_P002 Maize nucleus 44.83 42.95
Zm00001d006704_P002 Maize nucleus 47.36 42.56
CDY17719 Canola cytoskeleton, cytosol, nucleus 40.46 42.41
CDY50131 Canola nucleus 37.24 42.41
CDX77783 Canola nucleus 40.46 41.41
CDY58169 Canola cytosol, nucleus, plasma membrane 37.24 39.42
TraesCS2A01G190400.1 Wheat plastid 47.36 38.79
Zm00001d021950_P007 Maize endoplasmic reticulum, nucleus 47.36 38.08
Zm00001d019086_P001 Maize nucleus 46.21 37.78
CDY17173 Canola nucleus 32.18 37.14
CDY23739 Canola nucleus 32.64 37.08
CDX75170 Canola extracellular 13.79 36.81
CDY28918 Canola mitochondrion 40.92 36.78
CDY67299 Canola nucleus 32.18 36.75
CDY12068 Canola nucleus 30.11 36.59
OQU83904 Sorghum nucleus 37.47 36.22
CDX84689 Canola nucleus 33.33 35.54
CDX79527 Canola nucleus 33.1 35.47
CDX90262 Canola nucleus 30.57 34.82
CDY37724 Canola nucleus 25.75 34.67
CDY25957 Canola nucleus 42.3 33.27
CDY51790 Canola cytosol 8.05 32.71
GSMUA_Achr3P02300_001 Banana nucleus 50.34 32.25
CDY28822 Canola cytosol, nucleus, plastid 8.05 31.25
CDY24201 Canola nucleus 23.91 28.73
CDY43360 Canola nucleus 23.91 28.73
CDY26229 Canola nucleus 24.37 28.57
CDY48318 Canola nucleus 24.14 28.23
CDY45879 Canola cytosol, nucleus, plastid 22.3 28.03
CDY48851 Canola cytosol, nucleus, peroxisome 22.76 27.2
CDY42061 Canola cytosol, nucleus, plastid 22.3 26.72
CDY40554 Canola nucleus 40.0 26.52
CDY44555 Canola cytosol, nucleus, plastid 21.61 25.9
CDX69279 Canola nucleus 11.95 22.03
CDY69852 Canola cytosol 19.31 21.99
CDY42724 Canola cytosol 19.08 21.9
CDY02889 Canola nucleus 10.57 21.2
CDY69197 Canola nucleus 10.8 20.89
CDY04769 Canola nucleus 11.03 20.25
CDX73279 Canola cytosol 11.26 20.25
CDY36357 Canola nucleus 24.83 19.93
CDY42577 Canola nucleus 24.6 19.63
CDX73451 Canola cytosol 10.8 18.8
CDY25759 Canola nucleus 10.34 18.07
CDX78261 Canola nucleus 10.57 17.76
CDY64698 Canola nucleus 10.57 17.62
CDY41556 Canola nucleus 11.49 17.24
CDX96615 Canola nucleus 9.89 17.06
CDY31859 Canola nucleus 9.43 17.01
CDY31508 Canola nucleus 9.66 16.8
CDX88283 Canola nucleus 10.8 16.79
CDY01349 Canola nucleus 9.2 16.6
CDY33653 Canola nucleus 9.43 16.21
CDX87460 Canola nucleus 10.57 16.14
CDY55846 Canola nucleus 14.71 15.96
CDX88432 Canola nucleus 10.34 15.85
CDX80046 Canola nucleus 11.49 15.82
CDY25867 Canola nucleus 14.71 15.8
CDY29496 Canola nucleus 9.43 15.71
CDY41557 Canola nucleus 11.26 15.51
CDY26001 Canola nucleus 14.25 15.23
CDY27523 Canola nucleus 11.26 15.17
CDY48016 Canola nucleus 11.26 15.03
CDX68024 Canola nucleus 9.66 14.84
CDY24106 Canola nucleus 14.02 14.77
CDX79253 Canola nucleus 9.43 14.64
CDY46642 Canola nucleus 9.66 14.53
CDY21356 Canola nucleus 9.66 14.48
CDX76015 Canola nucleus 9.89 14.1
CDX87594 Canola nucleus 10.34 14.06
CDY67263 Canola nucleus 10.34 13.72
CDY27186 Canola nucleus 14.02 13.59
CDY06947 Canola nucleus 13.33 13.49
CDX72106 Canola nucleus 14.02 13.41
CDY08023 Canola nucleus 11.03 13.33
CDY57580 Canola nucleus 13.56 13.32
CDY00446 Canola nucleus 10.34 13.24
CDY21399 Canola mitochondrion 4.37 13.1
CDX76950 Canola nucleus 9.2 12.99
CDX74070 Canola cytosol 10.57 12.78
CDY13782 Canola nucleus 8.97 12.7
CDY24657 Canola nucleus 9.43 12.06
CDY05301 Canola nucleus 9.43 11.68
CDY15850 Canola nucleus 9.89 11.62
CDY13339 Canola mitochondrion 4.37 11.31
CDX69277 Canola mitochondrion 4.83 11.29
CDY47382 Canola golgi, plastid 10.57 11.06
Protein Annotations
Gene3D:3.30.70.330MapMan:35.1GO:A0A078HIU4UniProt:A0A078HIU4EnsemblPlants:CDY36753ProteinID:CDY36753
ProteinID:CDY36753.1InterPro:DAZAP1_RRM2GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00062576001InterPro:IPR000504InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sfPFAM:PF00076PFscan:PS50102
PANTHER:PTHR44291PANTHER:PTHR44291:SF1InterPro:RBD_domain_sfInterPro:RRM_domSMART:SM00360SUPFAM:SSF54928
UniParc:UPI0004EE1DBESEG:seg::::
Description
BnaA03g11330DBnaA03g11330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HIU4]
Coordinates
chrLK032383:-:108297..110277
Molecular Weight (calculated)
47830.0 Da
IEP (calculated)
6.808
GRAVY (calculated)
-0.691
Length
435 amino acids
Sequence
(BLAST)
001: MESDLGKLFI GGISWDTDEE RLREYFTNYG DVVEAVIMRD RATGRARGFG FIVFADPNVA ERVILEKHII DGRTVEAKKA VPRDDHQQVM KRHTSPIHLM
101: SPLHGGGNRT KKIFVGGLPS SITETEFKSY FDQFGTIADV VVMYDHNTQR PRGFGFITFD TDDAVDRVLH KTFHELNGKL VEVKRAVPKE VSPVSNIRSP
201: LHGAGYGGSY GGGSNRMSVN NSYFNNFAPG SGYYNNLGGS VGGRFSPVIG SGRLNHELNL NLNPSYDGIT FNRFPNNPYF NNASPNRYTS PIGQNGTESH
301: YSSSNIDLWG NRTDNAGPGW NLNVSSGNNR GNWGLPSSAV GNDNNGYGRS FETGSGLSAS PFESSIGNLY RGGSVYSDSM WRQQQQQQLP PQSSQEIDAF
401: SYGYDIDNVG SDPSANDSEG YNVGNRQTNR GKQHL
Best Arabidopsis Sequence Match ( AT5G55550.11 )
(BLAST)
001: MESDLGKLFI GGISWDTDEE RLRDYFSNYG DVVEAVIMRD RATGRARGFG FIVFADPCVS ERVIMDKHII DGRTVEAKKA VPRDDQQVLK RHASPIHLMS
101: PVHGGGGRTK KIFVGGLPSS ITEEEFKNYF DQFGTIADVV VMYDHNTQRP RGFGFITFDS DDAVDRVLHK TFHELNGKLV EVKRAVPKEI SPVSNIRSPL
201: ASGVNYGGGS NRMPANSYFN NFAPGPGFYN SLGPVGRRFS PVIGSGRNAV SAFGLGLNHD LSLNLNPSCD GTSSTFGYNR IPSNPYFNGA SPNRYTSPIG
301: HNRTESPYNS NNRDLWGNRT DTAGPGWNLN VSNGNNRGNW GLPSSSAVSN DNNGFGRNYG TSSGLSSSPF NGFEGSIGEL YRGGSVYSDS TWQQQQLPSQ
401: SSHELDNLSR AYGYDIDNVG SDPSANDPET YNGSYNVGNR QTNRGNKKIH LNKTCNLDTF
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT5G55550]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.