Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra028973.1-P | Field mustard | nucleus | 97.47 | 97.92 |
CDY11989 | Canola | nucleus | 95.4 | 96.06 |
AT5G55550.10 | Thale cress | nucleus | 83.45 | 71.6 |
CDX92807 | Canola | nucleus | 72.41 | 70.0 |
CDY46689 | Canola | nucleus | 73.33 | 68.9 |
CDX94301 | Canola | nucleus | 69.43 | 68.33 |
CDY46690 | Canola | nucleus | 66.67 | 67.76 |
CDX89316 | Canola | endoplasmic reticulum | 68.05 | 66.22 |
VIT_19s0090g01660.t01 | Wine grape | nucleus | 56.55 | 51.46 |
KRH14284 | Soybean | nucleus | 56.32 | 51.26 |
KRH73860 | Soybean | nucleus | 55.86 | 50.94 |
PGSC0003DMT400037271 | Potato | nucleus | 54.71 | 50.64 |
PGSC0003DMT400076643 | Potato | nucleus | 55.17 | 50.63 |
KRG98573 | Soybean | nucleus | 54.71 | 49.69 |
KRH46297 | Soybean | nucleus | 54.71 | 49.69 |
GSMUA_Achr10P... | Banana | nucleus | 49.89 | 49.32 |
GSMUA_Achr10P... | Banana | nucleus | 51.26 | 48.48 |
Solyc10g006050.2.1 | Tomato | nucleus | 48.05 | 48.27 |
Solyc12g014600.1.1 | Tomato | nucleus | 47.59 | 47.37 |
GSMUA_Achr4P33100_001 | Banana | nucleus | 47.82 | 47.06 |
HORVU0Hr1G008280.1 | Barley | nucleus | 48.74 | 45.79 |
TraesCS4A01G150600.1 | Wheat | nucleus | 48.74 | 45.79 |
TraesCS4D01G152200.1 | Wheat | nucleus | 48.74 | 45.79 |
GSMUA_Achr6P10970_001 | Banana | nucleus | 52.41 | 45.6 |
TraesCSU01G068500.1 | Wheat | nucleus | 48.51 | 45.57 |
Os11t0637700-01 | Rice | plasma membrane | 48.51 | 45.18 |
CDY07975 | Canola | nucleus | 48.74 | 45.01 |
CDX74030 | Canola | nucleus | 48.51 | 44.7 |
Zm00001d007772_P001 | Maize | nucleus | 45.98 | 44.54 |
TraesCS2D01G197500.2 | Wheat | nucleus | 47.82 | 44.26 |
Zm00001d019079_P001 | Maize | cytosol | 45.52 | 44.2 |
CDY66272 | Canola | nucleus | 49.66 | 44.17 |
TraesCS2B01G216600.2 | Wheat | cytosol | 47.82 | 44.16 |
Os07t0584500-01 | Rice | nucleus | 47.59 | 43.86 |
CDY22136 | Canola | nucleus | 48.74 | 43.62 |
EER97452 | Sorghum | nucleus | 47.13 | 43.52 |
CDY35966 | Canola | nucleus | 49.43 | 43.52 |
EER98147 | Sorghum | nucleus | 45.29 | 43.49 |
CDY41059 | Canola | nucleus | 42.53 | 43.33 |
EER96020 | Sorghum | nucleus | 45.29 | 43.3 |
Zm00001d019084_P002 | Maize | nucleus | 44.83 | 42.95 |
Zm00001d006704_P002 | Maize | nucleus | 47.36 | 42.56 |
CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 40.46 | 42.41 |
CDY50131 | Canola | nucleus | 37.24 | 42.41 |
CDX77783 | Canola | nucleus | 40.46 | 41.41 |
CDY58169 | Canola | cytosol, nucleus, plasma membrane | 37.24 | 39.42 |
TraesCS2A01G190400.1 | Wheat | plastid | 47.36 | 38.79 |
Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 47.36 | 38.08 |
Zm00001d019086_P001 | Maize | nucleus | 46.21 | 37.78 |
CDY17173 | Canola | nucleus | 32.18 | 37.14 |
CDY23739 | Canola | nucleus | 32.64 | 37.08 |
CDX75170 | Canola | extracellular | 13.79 | 36.81 |
CDY28918 | Canola | mitochondrion | 40.92 | 36.78 |
CDY67299 | Canola | nucleus | 32.18 | 36.75 |
CDY12068 | Canola | nucleus | 30.11 | 36.59 |
OQU83904 | Sorghum | nucleus | 37.47 | 36.22 |
CDX84689 | Canola | nucleus | 33.33 | 35.54 |
CDX79527 | Canola | nucleus | 33.1 | 35.47 |
CDX90262 | Canola | nucleus | 30.57 | 34.82 |
CDY37724 | Canola | nucleus | 25.75 | 34.67 |
CDY25957 | Canola | nucleus | 42.3 | 33.27 |
CDY51790 | Canola | cytosol | 8.05 | 32.71 |
GSMUA_Achr3P02300_001 | Banana | nucleus | 50.34 | 32.25 |
CDY28822 | Canola | cytosol, nucleus, plastid | 8.05 | 31.25 |
CDY24201 | Canola | nucleus | 23.91 | 28.73 |
CDY43360 | Canola | nucleus | 23.91 | 28.73 |
CDY26229 | Canola | nucleus | 24.37 | 28.57 |
CDY48318 | Canola | nucleus | 24.14 | 28.23 |
CDY45879 | Canola | cytosol, nucleus, plastid | 22.3 | 28.03 |
CDY48851 | Canola | cytosol, nucleus, peroxisome | 22.76 | 27.2 |
CDY42061 | Canola | cytosol, nucleus, plastid | 22.3 | 26.72 |
CDY40554 | Canola | nucleus | 40.0 | 26.52 |
CDY44555 | Canola | cytosol, nucleus, plastid | 21.61 | 25.9 |
CDX69279 | Canola | nucleus | 11.95 | 22.03 |
CDY69852 | Canola | cytosol | 19.31 | 21.99 |
CDY42724 | Canola | cytosol | 19.08 | 21.9 |
CDY02889 | Canola | nucleus | 10.57 | 21.2 |
CDY69197 | Canola | nucleus | 10.8 | 20.89 |
CDY04769 | Canola | nucleus | 11.03 | 20.25 |
CDX73279 | Canola | cytosol | 11.26 | 20.25 |
CDY36357 | Canola | nucleus | 24.83 | 19.93 |
CDY42577 | Canola | nucleus | 24.6 | 19.63 |
CDX73451 | Canola | cytosol | 10.8 | 18.8 |
CDY25759 | Canola | nucleus | 10.34 | 18.07 |
CDX78261 | Canola | nucleus | 10.57 | 17.76 |
CDY64698 | Canola | nucleus | 10.57 | 17.62 |
CDY41556 | Canola | nucleus | 11.49 | 17.24 |
CDX96615 | Canola | nucleus | 9.89 | 17.06 |
CDY31859 | Canola | nucleus | 9.43 | 17.01 |
CDY31508 | Canola | nucleus | 9.66 | 16.8 |
CDX88283 | Canola | nucleus | 10.8 | 16.79 |
CDY01349 | Canola | nucleus | 9.2 | 16.6 |
CDY33653 | Canola | nucleus | 9.43 | 16.21 |
CDX87460 | Canola | nucleus | 10.57 | 16.14 |
CDY55846 | Canola | nucleus | 14.71 | 15.96 |
CDX88432 | Canola | nucleus | 10.34 | 15.85 |
CDX80046 | Canola | nucleus | 11.49 | 15.82 |
CDY25867 | Canola | nucleus | 14.71 | 15.8 |
CDY29496 | Canola | nucleus | 9.43 | 15.71 |
CDY41557 | Canola | nucleus | 11.26 | 15.51 |
CDY26001 | Canola | nucleus | 14.25 | 15.23 |
CDY27523 | Canola | nucleus | 11.26 | 15.17 |
CDY48016 | Canola | nucleus | 11.26 | 15.03 |
CDX68024 | Canola | nucleus | 9.66 | 14.84 |
CDY24106 | Canola | nucleus | 14.02 | 14.77 |
CDX79253 | Canola | nucleus | 9.43 | 14.64 |
CDY46642 | Canola | nucleus | 9.66 | 14.53 |
CDY21356 | Canola | nucleus | 9.66 | 14.48 |
CDX76015 | Canola | nucleus | 9.89 | 14.1 |
CDX87594 | Canola | nucleus | 10.34 | 14.06 |
CDY67263 | Canola | nucleus | 10.34 | 13.72 |
CDY27186 | Canola | nucleus | 14.02 | 13.59 |
CDY06947 | Canola | nucleus | 13.33 | 13.49 |
CDX72106 | Canola | nucleus | 14.02 | 13.41 |
CDY08023 | Canola | nucleus | 11.03 | 13.33 |
CDY57580 | Canola | nucleus | 13.56 | 13.32 |
CDY00446 | Canola | nucleus | 10.34 | 13.24 |
CDY21399 | Canola | mitochondrion | 4.37 | 13.1 |
CDX76950 | Canola | nucleus | 9.2 | 12.99 |
CDX74070 | Canola | cytosol | 10.57 | 12.78 |
CDY13782 | Canola | nucleus | 8.97 | 12.7 |
CDY24657 | Canola | nucleus | 9.43 | 12.06 |
CDY05301 | Canola | nucleus | 9.43 | 11.68 |
CDY15850 | Canola | nucleus | 9.89 | 11.62 |
CDY13339 | Canola | mitochondrion | 4.37 | 11.31 |
CDX69277 | Canola | mitochondrion | 4.83 | 11.29 |
CDY47382 | Canola | golgi, plastid | 10.57 | 11.06 |
Protein Annotations
Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078HIU4 | UniProt:A0A078HIU4 | EnsemblPlants:CDY36753 | ProteinID:CDY36753 |
ProteinID:CDY36753.1 | InterPro:DAZAP1_RRM2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
EnsemblPlantsGene:GSBRNA2T00062576001 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
PANTHER:PTHR44291 | PANTHER:PTHR44291:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
UniParc:UPI0004EE1DBE | SEG:seg | : | : | : | : |
Description
BnaA03g11330DBnaA03g11330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HIU4]
Coordinates
chrLK032383:-:108297..110277
Molecular Weight (calculated)
47830.0 Da
IEP (calculated)
6.808
GRAVY (calculated)
-0.691
Length
435 amino acids
Sequence
(BLAST)
(BLAST)
001: MESDLGKLFI GGISWDTDEE RLREYFTNYG DVVEAVIMRD RATGRARGFG FIVFADPNVA ERVILEKHII DGRTVEAKKA VPRDDHQQVM KRHTSPIHLM
101: SPLHGGGNRT KKIFVGGLPS SITETEFKSY FDQFGTIADV VVMYDHNTQR PRGFGFITFD TDDAVDRVLH KTFHELNGKL VEVKRAVPKE VSPVSNIRSP
201: LHGAGYGGSY GGGSNRMSVN NSYFNNFAPG SGYYNNLGGS VGGRFSPVIG SGRLNHELNL NLNPSYDGIT FNRFPNNPYF NNASPNRYTS PIGQNGTESH
301: YSSSNIDLWG NRTDNAGPGW NLNVSSGNNR GNWGLPSSAV GNDNNGYGRS FETGSGLSAS PFESSIGNLY RGGSVYSDSM WRQQQQQQLP PQSSQEIDAF
401: SYGYDIDNVG SDPSANDSEG YNVGNRQTNR GKQHL
101: SPLHGGGNRT KKIFVGGLPS SITETEFKSY FDQFGTIADV VVMYDHNTQR PRGFGFITFD TDDAVDRVLH KTFHELNGKL VEVKRAVPKE VSPVSNIRSP
201: LHGAGYGGSY GGGSNRMSVN NSYFNNFAPG SGYYNNLGGS VGGRFSPVIG SGRLNHELNL NLNPSYDGIT FNRFPNNPYF NNASPNRYTS PIGQNGTESH
301: YSSSNIDLWG NRTDNAGPGW NLNVSSGNNR GNWGLPSSAV GNDNNGYGRS FETGSGLSAS PFESSIGNLY RGGSVYSDSM WRQQQQQQLP PQSSQEIDAF
401: SYGYDIDNVG SDPSANDSEG YNVGNRQTNR GKQHL
001: MESDLGKLFI GGISWDTDEE RLRDYFSNYG DVVEAVIMRD RATGRARGFG FIVFADPCVS ERVIMDKHII DGRTVEAKKA VPRDDQQVLK RHASPIHLMS
101: PVHGGGGRTK KIFVGGLPSS ITEEEFKNYF DQFGTIADVV VMYDHNTQRP RGFGFITFDS DDAVDRVLHK TFHELNGKLV EVKRAVPKEI SPVSNIRSPL
201: ASGVNYGGGS NRMPANSYFN NFAPGPGFYN SLGPVGRRFS PVIGSGRNAV SAFGLGLNHD LSLNLNPSCD GTSSTFGYNR IPSNPYFNGA SPNRYTSPIG
301: HNRTESPYNS NNRDLWGNRT DTAGPGWNLN VSNGNNRGNW GLPSSSAVSN DNNGFGRNYG TSSGLSSSPF NGFEGSIGEL YRGGSVYSDS TWQQQQLPSQ
401: SSHELDNLSR AYGYDIDNVG SDPSANDPET YNGSYNVGNR QTNRGNKKIH LNKTCNLDTF
101: PVHGGGGRTK KIFVGGLPSS ITEEEFKNYF DQFGTIADVV VMYDHNTQRP RGFGFITFDS DDAVDRVLHK TFHELNGKLV EVKRAVPKEI SPVSNIRSPL
201: ASGVNYGGGS NRMPANSYFN NFAPGPGFYN SLGPVGRRFS PVIGSGRNAV SAFGLGLNHD LSLNLNPSCD GTSSTFGYNR IPSNPYFNGA SPNRYTSPIG
301: HNRTESPYNS NNRDLWGNRT DTAGPGWNLN VSNGNNRGNW GLPSSSAVSN DNNGFGRNYG TSSGLSSSPF NGFEGSIGEL YRGGSVYSDS TWQQQQLPSQ
401: SSHELDNLSR AYGYDIDNVG SDPSANDPET YNGSYNVGNR QTNRGNKKIH LNKTCNLDTF
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT5G55550]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.