Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021062.1-P | Field mustard | nucleus | 94.16 | 98.72 |
| CDY50131 | Canola | nucleus | 87.59 | 94.24 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 60.1 | 59.52 |
| CDX77783 | Canola | nucleus | 59.85 | 57.88 |
| CDY41059 | Canola | nucleus | 60.1 | 57.85 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 60.58 | 54.97 |
| CDY28918 | Canola | mitochondrion | 62.04 | 52.69 |
| CDX75170 | Canola | extracellular | 18.25 | 46.01 |
| CDY25957 | Canola | nucleus | 60.83 | 45.21 |
| Os11t0637700-01 | Rice | plasma membrane | 45.99 | 40.47 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 43.07 | 40.05 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 45.01 | 39.96 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 45.01 | 39.96 |
| TraesCS4D01G152200.1 | Wheat | nucleus | 45.01 | 39.96 |
| TraesCSU01G068500.1 | Wheat | nucleus | 45.01 | 39.96 |
| Os07t0584500-01 | Rice | nucleus | 45.26 | 39.41 |
| GSMUA_Achr10P... | Banana | nucleus | 42.09 | 39.32 |
| EER96020 | Sorghum | nucleus | 42.82 | 38.68 |
| EER98147 | Sorghum | nucleus | 42.58 | 38.63 |
| Zm00001d019079_P001 | Maize | cytosol | 42.09 | 38.62 |
| Zm00001d007772_P001 | Maize | nucleus | 42.09 | 38.53 |
| GSMUA_Achr10P... | Banana | nucleus | 43.07 | 38.48 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 43.8 | 38.3 |
| EER97452 | Sorghum | nucleus | 43.8 | 38.22 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 43.8 | 38.22 |
| CDY07975 | Canola | nucleus | 43.55 | 38.0 |
| CDY40554 | Canola | nucleus | 60.58 | 37.96 |
| CDX94301 | Canola | nucleus | 40.63 | 37.78 |
| CDX74030 | Canola | nucleus | 43.31 | 37.71 |
| CDY46690 | Canola | nucleus | 39.17 | 37.62 |
| Zm00001d019084_P002 | Maize | nucleus | 41.36 | 37.44 |
| CDY66272 | Canola | nucleus | 44.53 | 37.42 |
| CDX92807 | Canola | nucleus | 40.88 | 37.33 |
| CDY11989 | Canola | nucleus | 39.17 | 37.27 |
| CDY36753 | Canola | nucleus | 39.42 | 37.24 |
| CDY22136 | Canola | nucleus | 43.8 | 37.04 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 45.01 | 37.0 |
| Zm00001d006704_P002 | Maize | nucleus | 43.55 | 36.98 |
| CDY35966 | Canola | nucleus | 44.28 | 36.84 |
| CDX89316 | Canola | endoplasmic reticulum | 39.9 | 36.69 |
| CDY46689 | Canola | nucleus | 40.63 | 36.07 |
| TraesCS2A01G190400.1 | Wheat | plastid | 43.8 | 33.9 |
| OQU83904 | Sorghum | nucleus | 36.98 | 33.78 |
| CDY12068 | Canola | nucleus | 28.95 | 33.24 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 43.31 | 32.9 |
| Zm00001d019086_P001 | Maize | nucleus | 42.58 | 32.89 |
| CDY67299 | Canola | nucleus | 30.41 | 32.81 |
| CDX90262 | Canola | nucleus | 30.41 | 32.72 |
| CDY23739 | Canola | nucleus | 30.41 | 32.64 |
| CDY17173 | Canola | nucleus | 29.93 | 32.63 |
| CDX79527 | Canola | nucleus | 29.93 | 30.3 |
| CDX84689 | Canola | nucleus | 29.93 | 30.15 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 25.79 | 29.2 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 24.57 | 29.19 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 25.79 | 29.12 |
| CDY37724 | Canola | nucleus | 22.87 | 29.1 |
| CDY51790 | Canola | cytosol | 7.54 | 28.97 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 7.79 | 28.57 |
| CDY24201 | Canola | nucleus | 25.06 | 28.45 |
| CDY43360 | Canola | nucleus | 25.06 | 28.45 |
| CDY26229 | Canola | nucleus | 25.06 | 27.76 |
| CDY48318 | Canola | nucleus | 25.06 | 27.69 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 24.09 | 27.27 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 42.58 | 25.77 |
| CDY42577 | Canola | nucleus | 27.74 | 20.92 |
| CDY42724 | Canola | cytosol | 19.22 | 20.84 |
| CDY69852 | Canola | cytosol | 19.22 | 20.68 |
| CDY36357 | Canola | nucleus | 27.01 | 20.48 |
| CDY31859 | Canola | nucleus | 11.92 | 20.33 |
| CDY02889 | Canola | nucleus | 10.71 | 20.28 |
| CDY04769 | Canola | nucleus | 11.68 | 20.25 |
| CDY25759 | Canola | nucleus | 12.17 | 20.08 |
| CDY31508 | Canola | nucleus | 12.17 | 20.0 |
| CDY69197 | Canola | nucleus | 10.95 | 20.0 |
| CDY01349 | Canola | nucleus | 11.68 | 19.92 |
| CDX73279 | Canola | cytosol | 11.68 | 19.83 |
| CDX69279 | Canola | nucleus | 11.19 | 19.49 |
| CDY29496 | Canola | nucleus | 11.92 | 18.77 |
| CDX73451 | Canola | cytosol | 11.19 | 18.4 |
| CDX96615 | Canola | nucleus | 11.19 | 18.25 |
| CDY33653 | Canola | nucleus | 11.19 | 18.18 |
| CDX78261 | Canola | nucleus | 11.44 | 18.15 |
| CDY64698 | Canola | nucleus | 11.19 | 17.62 |
| CDY41556 | Canola | nucleus | 11.92 | 16.9 |
| CDY25867 | Canola | nucleus | 16.55 | 16.79 |
| CDX88283 | Canola | nucleus | 11.44 | 16.79 |
| CDY24106 | Canola | nucleus | 16.55 | 16.46 |
| CDY55846 | Canola | nucleus | 16.06 | 16.46 |
| CDX88432 | Canola | nucleus | 11.19 | 16.2 |
| CDX87460 | Canola | nucleus | 11.19 | 16.14 |
| CDX79253 | Canola | nucleus | 10.95 | 16.07 |
| CDY26001 | Canola | nucleus | 15.82 | 15.97 |
| CDX68024 | Canola | nucleus | 10.95 | 15.9 |
| CDY67263 | Canola | nucleus | 12.41 | 15.55 |
| CDX80046 | Canola | nucleus | 11.92 | 15.51 |
| CDY08023 | Canola | nucleus | 13.38 | 15.28 |
| CDY41557 | Canola | nucleus | 11.68 | 15.19 |
| CDY27523 | Canola | nucleus | 11.92 | 15.17 |
| CDY48016 | Canola | nucleus | 11.92 | 15.03 |
| CDX74070 | Canola | cytosol | 13.14 | 15.0 |
| CDX87594 | Canola | nucleus | 11.68 | 15.0 |
| CDY27186 | Canola | nucleus | 16.3 | 14.92 |
| CDY21356 | Canola | nucleus | 10.46 | 14.83 |
| CDX72106 | Canola | nucleus | 16.3 | 14.73 |
| CDY13782 | Canola | nucleus | 10.95 | 14.66 |
| CDX76950 | Canola | nucleus | 10.95 | 14.61 |
| CDY46642 | Canola | nucleus | 10.22 | 14.53 |
| CDY06947 | Canola | nucleus | 15.09 | 14.42 |
| CDY57580 | Canola | nucleus | 15.09 | 14.0 |
| CDX76015 | Canola | nucleus | 9.73 | 13.11 |
| CDY24657 | Canola | nucleus | 10.71 | 12.94 |
| CDY05301 | Canola | nucleus | 10.95 | 12.82 |
| CDY00446 | Canola | nucleus | 10.22 | 12.35 |
| CDY15850 | Canola | nucleus | 10.46 | 11.62 |
| CDY13339 | Canola | mitochondrion | 4.62 | 11.31 |
| CDY21399 | Canola | mitochondrion | 3.89 | 11.03 |
| CDY47382 | Canola | golgi, plastid | 9.98 | 9.86 |
| CDX69277 | Canola | mitochondrion | 3.89 | 8.6 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078J3D4 | UniProt:A0A078J3D4 | EnsemblPlants:CDY58169 | ProteinID:CDY58169 |
| ProteinID:CDY58169.1 | InterPro:DAZAP1_RRM2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00023187001 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44291 | PANTHER:PTHR44291:SF3 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | TMHMM:TMhelix | UniParc:UPI0004EE968C | SEG:seg |
Description
BnaA08g30250DBnaA08g30250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J3D4]
Coordinates
chrLK033642:+:32048..33710
Molecular Weight (calculated)
45122.5 Da
IEP (calculated)
8.297
GRAVY (calculated)
-0.256
Length
411 amino acids
Sequence
(BLAST)
(BLAST)
001: MPCVSESSFD RMELESSCKL FIGGISWETT EDSLLQYFQT FGEVLEALVI KDRLTGRARG FGFIVFKDSS VAQRVLLQKH MIDGKSVEAK KAVPRDDHIS
101: VNKSNSSLQG SPGPAHSKKI FVGGLASSVT EAEFKKYFSQ FGTIIDLVVM YDHKTQRPRG FGFVTYDSEE AVDKVLQRKF HELDGKMVEV KVAVPKETSP
201: IPNMNISSLN NFGSSRMSLL LNDYTQGFNL SPTSAKPEVR YSPALSNQRS FSPFGHGFEI DLDFIERNHN QSNVSRRLFS PGYNASLSRY GGQGDGSVNR
301: NQLWGNNGGL SYMSNAELSG GFNGNYGVGS IGEKWGTVGE GRINYGISNG MGLGSRGGGG AHMSSSGWGM SSEGGGMRGC GYMNNTELLC FFFVLIWNLL
401: FFFIFVLFAV K
101: VNKSNSSLQG SPGPAHSKKI FVGGLASSVT EAEFKKYFSQ FGTIIDLVVM YDHKTQRPRG FGFVTYDSEE AVDKVLQRKF HELDGKMVEV KVAVPKETSP
201: IPNMNISSLN NFGSSRMSLL LNDYTQGFNL SPTSAKPEVR YSPALSNQRS FSPFGHGFEI DLDFIERNHN QSNVSRRLFS PGYNASLSRY GGQGDGSVNR
301: NQLWGNNGGL SYMSNAELSG GFNGNYGVGS IGEKWGTVGE GRINYGISNG MGLGSRGGGG AHMSSSGWGM SSEGGGMRGC GYMNNTELLC FFFVLIWNLL
401: FFFIFVLFAV K
001: MEMESCKLFI GGISWETSED RLRDYFHSFG EVLEAVIMKD RATGRARGFG FVVFADPNVA ERVVLLKHII DGKIVEAKKA VPRDDHVVFN KSNSSLQGSP
101: GPSNSKKIFV GGLASSVTEA EFKKYFAQFG MITDVVVMYD HRTQRPRGFG FISYDSEEAV DKVLQKTFHE LNGKMVEVKL AVPKDMALNT MRNQMNVNSF
201: GTSRISSLLN EYTQGFSPSP ISGYGVKPEV RYSPAVGNRG GFSPFGHGYG IELNFEPNQT QNYGSGSSGG FGRPFSPGYA ASLGRFGSQM ESGGASVGNG
301: SVLNAAPKNH LWGNGGLGYM SNSPISRSSF SGNSGMSSLG SIGDNWGTVA RARSSYHGER GGVGLEAMRG VHVGGYSSGS SILEADSLYS DSMWLSLPAK
401: AEEGLGMGPL DFMSRGPAGY INRQPNGGIA A
101: GPSNSKKIFV GGLASSVTEA EFKKYFAQFG MITDVVVMYD HRTQRPRGFG FISYDSEEAV DKVLQKTFHE LNGKMVEVKL AVPKDMALNT MRNQMNVNSF
201: GTSRISSLLN EYTQGFSPSP ISGYGVKPEV RYSPAVGNRG GFSPFGHGYG IELNFEPNQT QNYGSGSSGG FGRPFSPGYA ASLGRFGSQM ESGGASVGNG
301: SVLNAAPKNH LWGNGGLGYM SNSPISRSSF SGNSGMSSLG SIGDNWGTVA RARSSYHGER GGVGLEAMRG VHVGGYSSGS SILEADSLYS DSMWLSLPAK
401: AEEGLGMGPL DFMSRGPAGY INRQPNGGIA A
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JYK6]
SUBAcon: [cytoskeleton,nucleus,cytosol]
SUBAcon: [cytoskeleton,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.