Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012350.1-P | Field mustard | nucleus | 73.78 | 97.19 |
| CDY25759 | Canola | nucleus | 73.48 | 96.79 |
| CDY04769 | Canola | nucleus | 63.41 | 87.76 |
| CDY69197 | Canola | nucleus | 59.15 | 86.22 |
| CDY21399 | Canola | mitochondrion | 37.2 | 84.14 |
| KRH75298 | Soybean | cytosol, nucleus | 21.65 | 71.72 |
| AT1G22910.3 | Thale cress | nucleus | 72.26 | 68.3 |
| KRH13261 | Soybean | cytosol | 25.0 | 66.13 |
| Solyc11g044470.1.1 | Tomato | mitochondrion, nucleus, plastid | 38.41 | 48.28 |
| VIT_18s0089g00920.t01 | Wine grape | nucleus | 39.33 | 47.96 |
| PGSC0003DMT400008944 | Potato | nucleus | 38.41 | 47.73 |
| KRH23771 | Soybean | nucleus | 37.8 | 45.59 |
| KRH40033 | Soybean | nucleus | 37.8 | 45.59 |
| CDY51790 | Canola | cytosol | 14.33 | 43.93 |
| EES01849 | Sorghum | nucleus | 34.76 | 43.51 |
| CDX73279 | Canola | cytosol | 31.71 | 42.98 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 34.76 | 42.22 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 33.23 | 42.08 |
| GSMUA_Achr10P... | Banana | nucleus | 34.76 | 42.07 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 33.54 | 41.98 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 14.33 | 41.96 |
| KRH62942 | Soybean | mitochondrion | 25.3 | 40.69 |
| Zm00001d042641_P001 | Maize | nucleus | 35.98 | 40.0 |
| CDY31508 | Canola | nucleus | 30.18 | 39.6 |
| TraesCS3D01G380100.1 | Wheat | nucleus | 35.67 | 39.53 |
| CDY31859 | Canola | nucleus | 28.96 | 39.42 |
| Os01t0876800-00 | Rice | nucleus | 35.98 | 39.33 |
| TraesCS3B01G419200.1 | Wheat | nucleus | 35.06 | 38.85 |
| TraesCS3A01G389600.1 | Wheat | nucleus | 35.06 | 38.72 |
| CDY33653 | Canola | nucleus | 29.57 | 38.34 |
| CDY29496 | Canola | nucleus | 30.18 | 37.93 |
| CDY01349 | Canola | nucleus | 27.44 | 37.34 |
| CDX96615 | Canola | nucleus | 28.66 | 37.3 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 36.59 | 35.29 |
| TraesCS3B01G562300.3 | Wheat | mitochondrion | 32.93 | 34.62 |
| TraesCS3A01G499100.1 | Wheat | cytosol, nucleus, plastid | 32.62 | 34.29 |
| CDX88283 | Canola | nucleus | 29.27 | 34.29 |
| HORVU3Hr1G110370.1 | Barley | cytosol, mitochondrion, nucleus | 32.62 | 34.19 |
| TraesCS3D01G505900.1 | Wheat | mitochondrion | 32.93 | 34.18 |
| CDY02889 | Canola | nucleus | 21.95 | 33.18 |
| Os01t0958500-01 | Rice | nucleus | 31.1 | 32.9 |
| CDX87594 | Canola | nucleus | 31.71 | 32.5 |
| CDX73451 | Canola | cytosol | 24.7 | 32.4 |
| CDY41556 | Canola | nucleus | 28.05 | 31.72 |
| CDX78261 | Canola | nucleus | 25.0 | 31.66 |
| EES02078 | Sorghum | nucleus | 31.71 | 30.77 |
| CDY64698 | Canola | nucleus | 24.39 | 30.65 |
| Zm00001d042042_P001 | Maize | nucleus | 31.1 | 30.0 |
| CDX87460 | Canola | nucleus | 25.61 | 29.47 |
| CDX80046 | Canola | nucleus | 28.35 | 29.43 |
| CDY41557 | Canola | nucleus | 28.05 | 29.11 |
| CDX88432 | Canola | nucleus | 25.0 | 28.87 |
| CDY48016 | Canola | nucleus | 28.66 | 28.83 |
| CDX79253 | Canola | nucleus | 24.39 | 28.57 |
| CDY27523 | Canola | nucleus | 28.05 | 28.48 |
| CDY46642 | Canola | nucleus | 24.7 | 28.03 |
| CDX68024 | Canola | nucleus | 24.09 | 27.92 |
| CDY21356 | Canola | nucleus | 24.39 | 27.59 |
| CDY13339 | Canola | mitochondrion | 12.2 | 23.81 |
| CDY00446 | Canola | nucleus | 24.39 | 23.53 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 34.45 | 16.94 |
| CDY05301 | Canola | nucleus | 17.07 | 15.95 |
| CDY24657 | Canola | nucleus | 16.46 | 15.88 |
| CDY13782 | Canola | nucleus | 14.33 | 15.31 |
| CDX76950 | Canola | nucleus | 14.33 | 15.26 |
| CDX74070 | Canola | cytosol | 15.85 | 14.44 |
| CDY08023 | Canola | nucleus | 15.85 | 14.44 |
| CDY37724 | Canola | nucleus | 14.02 | 14.24 |
| CDY25867 | Canola | nucleus | 17.07 | 13.83 |
| CDY26229 | Canola | nucleus | 15.55 | 13.75 |
| CDY48318 | Canola | nucleus | 15.55 | 13.71 |
| CDY12068 | Canola | nucleus | 14.63 | 13.41 |
| CDY50131 | Canola | nucleus | 15.55 | 13.35 |
| CDY26001 | Canola | nucleus | 16.46 | 13.27 |
| CDY55846 | Canola | nucleus | 16.16 | 13.22 |
| CDY67299 | Canola | nucleus | 15.24 | 13.12 |
| CDX90262 | Canola | nucleus | 15.24 | 13.09 |
| CDY24106 | Canola | nucleus | 16.46 | 13.08 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 16.46 | 13.01 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 13.72 | 13.01 |
| CDY17173 | Canola | nucleus | 14.94 | 13.0 |
| CDY24201 | Canola | nucleus | 14.33 | 12.98 |
| CDY43360 | Canola | nucleus | 14.33 | 12.98 |
| CDY23739 | Canola | nucleus | 14.94 | 12.79 |
| CDY41059 | Canola | nucleus | 16.46 | 12.65 |
| CDX79527 | Canola | nucleus | 15.55 | 12.56 |
| CDX77783 | Canola | nucleus | 16.16 | 12.47 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 15.55 | 12.41 |
| CDX84689 | Canola | nucleus | 15.24 | 12.25 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 13.41 | 12.12 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 13.41 | 12.09 |
| CDY42724 | Canola | cytosol | 13.72 | 11.87 |
| CDY69852 | Canola | cytosol | 13.72 | 11.78 |
| CDY07975 | Canola | nucleus | 16.77 | 11.68 |
| CDX74030 | Canola | nucleus | 16.77 | 11.65 |
| CDY22136 | Canola | nucleus | 16.77 | 11.32 |
| CDY66272 | Canola | nucleus | 16.46 | 11.04 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 12.2 | 11.02 |
| CDY35966 | Canola | nucleus | 16.46 | 10.93 |
| CDY06947 | Canola | nucleus | 14.33 | 10.93 |
| CDY27186 | Canola | nucleus | 14.94 | 10.91 |
| CDX76015 | Canola | nucleus | 10.06 | 10.82 |
| CDX72106 | Canola | nucleus | 14.94 | 10.77 |
| CDY46690 | Canola | nucleus | 14.02 | 10.75 |
| CDY57580 | Canola | nucleus | 14.33 | 10.61 |
| CDY28918 | Canola | mitochondrion | 15.55 | 10.54 |
| CDX75170 | Canola | extracellular | 5.18 | 10.43 |
| CDY36753 | Canola | nucleus | 13.72 | 10.34 |
| CDY15850 | Canola | nucleus | 11.59 | 10.27 |
| CDX94301 | Canola | nucleus | 13.72 | 10.18 |
| CDY46689 | Canola | nucleus | 14.33 | 10.15 |
| CDX92807 | Canola | nucleus | 13.72 | 10.0 |
| CDY11989 | Canola | nucleus | 13.11 | 9.95 |
| CDY25957 | Canola | nucleus | 16.46 | 9.76 |
| CDX69279 | Canola | nucleus | 7.01 | 9.75 |
| CDY36357 | Canola | nucleus | 15.85 | 9.59 |
| CDX89316 | Canola | endoplasmic reticulum | 12.8 | 9.4 |
| CDY42577 | Canola | nucleus | 15.55 | 9.36 |
| CDY47382 | Canola | golgi, plastid | 10.37 | 8.17 |
| CDY40554 | Canola | nucleus | 15.55 | 7.77 |
| CDX69277 | Canola | mitochondrion | 3.35 | 5.91 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078JI88 | UniProt:A0A078JI88 | EnsemblPlants:CDY67263 | ProteinID:CDY67263 |
| ProteinID:CDY67263.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00060522001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44374 |
| PANTHER:PTHR44374:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EED095 |
| SEG:seg | : | : | : | : | : |
Description
BnaCnng54160DBnaCnng54160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JI88]
Coordinates
chrLK035910:-:5270..7868
Molecular Weight (calculated)
35613.4 Da
IEP (calculated)
8.348
GRAVY (calculated)
-0.192
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MTGGIGLGDT TYTKVFVGGL AWETHKDTLK KHFEQFGEIL EAVVITDKAS GRSKGYGFVT FKEADAASKA CVDATPVIDG RRANCNLASL GLQRSKPSTP
101: NHGGGRINNM RVMMNTMQTG FGPPHPPPTF PHYPQLPLNL FGYSPYSSDY SPFPTSLYGV YDCYSRGQYG LYSNGNGGSG GLTAAAASAA PFYPCGSGGV
201: QFTQPQPFYH HFSSYNNPHQ YSPATISVQQ GVTGFPLQPP LIPYRALWLS QLFLSPSALK ATHFMEFEVA IMSRSPMGSP VSDGDHVVLT SLTFLHCIFL
301: RGKGFSLDTV IMLMEQNRQS LIMCQTQS
101: NHGGGRINNM RVMMNTMQTG FGPPHPPPTF PHYPQLPLNL FGYSPYSSDY SPFPTSLYGV YDCYSRGQYG LYSNGNGGSG GLTAAAASAA PFYPCGSGGV
201: QFTQPQPFYH HFSSYNNPHQ YSPATISVQQ GVTGFPLQPP LIPYRALWLS QLFLSPSALK ATHFMEFEVA IMSRSPMGSP VSDGDHVVLT SLTFLHCIFL
301: RGKGFSLDTV IMLMEQNRQS LIMCQTQS
001: MAGGIGLGDT TYTKVFVGGL AWETHKETMK KHFEQFGEIL EAVVITDKAS GRSKGYGFVT FREAEAARSA CVDATPVIDG RRANCNLASL GLQRSKPSTP
101: NHGGGGRINN MRVMMSTMQT GFGPPPPPQP PTFTHYPHLP LNLFGYSPYS PDYSSFPTNL YGMYGCTSGG QYGVYGNRNS GGGGLTAAAA SATPFYPCGG
201: GHGGVQFSQP QPFYHHLSSY NPHHYSPPTF SMQQGSRNRL SASTTSYSLP LKKLRVFGSY QASYHHLLLL RSRAILWFKG CSWLISALSF SPSALKATPF
301: YGIWRWLFKQ IPMGSPVSDG DHVVFVISHL LAIASSRENG FLFERYC
101: NHGGGGRINN MRVMMSTMQT GFGPPPPPQP PTFTHYPHLP LNLFGYSPYS PDYSSFPTNL YGMYGCTSGG QYGVYGNRNS GGGGLTAAAA SATPFYPCGG
201: GHGGVQFSQP QPFYHHLSSY NPHHYSPPTF SMQQGSRNRL SASTTSYSLP LKKLRVFGSY QASYHHLLLL RSRAILWFKG CSWLISALSF SPSALKATPF
301: YGIWRWLFKQ IPMGSPVSDG DHVVFVISHL LAIASSRENG FLFERYC
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I321]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.