Factsheet for TraesCS3A01G499100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G258200.1
TraesCS1B01G268700.1
TraesCS1D01G257500.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G33470.1	TraesCS1A01G258200.1	AT3G56680.1	21798944
AT1G33470.1	TraesCS1B01G268700.1	AT3G56680.1	21798944
AT1G33470.1	TraesCS1D01G257500.2	AT3G56680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G562300.3	Wheat	mitochondrion	94.55	94.55
TraesCS3D01G505900.1	Wheat	mitochondrion	94.23	93.04
HORVU3Hr1G110370.1	Barley	cytosol, mitochondrion, nucleus	93.27	92.97
KRH75298	Soybean	cytosol, nucleus	22.44	70.71
Os01t0958500-01	Rice	nucleus	68.27	68.71
KRH13261	Soybean	cytosol	24.68	62.1
EES02078	Sorghum	nucleus	61.22	56.51
Zm00001d042042_P001	Maize	nucleus	61.22	56.18
KRH40033	Soybean	nucleus	41.35	47.43
PGSC0003DMT400008944	Potato	nucleus	40.06	47.35
VIT_18s0089g00920.t01	Wine grape	nucleus	40.71	47.21
KRH23771	Soybean	nucleus	41.03	47.06
Solyc11g044470.1.1	Tomato	mitochondrion, nucleus, plastid	39.1	46.74
GSMUA_Achr6P17510_001	Banana	cytosol, mitochondrion, nucleus	39.1	45.19
Bra024547.1-P	Field mustard	nucleus	34.29	44.77
GSMUA_Achr3P21850_001	Banana	nucleus	37.5	44.66
GSMUA_Achr10P...	Banana	nucleus	38.78	44.65
CDY69197	Canola	nucleus	32.05	44.44
CDY04769	Canola	nucleus	33.65	44.3
GSMUA_Achr8P08440_001	Banana	nucleus	36.22	43.63
CDX73279	Canola	cytosol	33.33	42.98
AT1G33470.1	Thale cress	cytosol	33.65	42.86
Bra012350.1-P	Field mustard	nucleus	33.65	42.17
CDY25759	Canola	nucleus	33.33	41.77
TraesCS3A01G389600.1	Wheat	nucleus	38.46	40.4
KRH62942	Soybean	mitochondrion	25.32	38.73
TraesCS4A01G068100.1	Wheat	nucleus	30.13	37.75
TraesCS7A01G398200.1	Wheat	cytosol, mitochondrion, nucleus	33.33	36.75
Bra010203.1-P	Field mustard	nucleus	33.65	34.43
TraesCS6A01G278300.3	Wheat	plastid	31.41	33.56
TraesCS4A01G106800.2	Wheat	cytosol, mitochondrion, nucleus	32.05	33.22
CDY67263	Canola	nucleus	34.29	32.62
AT1G22910.3	Thale cress	nucleus	35.26	31.7
TraesCS7A01G178700.2	Wheat	nucleus	30.45	31.25
CDY13339	Canola	mitochondrion	13.78	25.6
CDY21399	Canola	mitochondrion	10.9	23.45
TraesCS6A01G318100.1	Wheat	nucleus	27.56	17.66
GSMUA_Achr6P24180_001	Banana	cytosol	37.18	17.39
TraesCS7A01G360900.1	Wheat	nucleus	18.59	14.46
TraesCS6A01G187000.1	Wheat	nucleus	18.91	14.29
TraesCS6A01G291100.1	Wheat	nucleus	15.06	13.78
TraesCS3A01G220400.1	Wheat	nucleus	18.91	13.41
TraesCS7A01G282600.1	Wheat	cytosol	14.74	13.14
TraesCS3A01G485000.1	Wheat	cytosol	15.38	12.87
TraesCS1A01G234200.1	Wheat	cytosol	14.74	12.6
TraesCS4A01G150600.1	Wheat	nucleus	18.59	12.53
TraesCS1A01G150600.1	Wheat	nucleus	17.95	12.33
TraesCS2A01G267500.1	Wheat	nucleus	13.78	11.56
TraesCS2A01G190400.1	Wheat	plastid	18.59	10.92
TraesCS2A01G526400.1	Wheat	nucleus	17.63	10.81
TraesCS5A01G405300.1	Wheat	nucleus	11.54	10.03
TraesCS3A01G181900.1	Wheat	nucleus	13.78	8.96

Protein Annotations

EnsemblPlants:TraesCS3A01G499100.1	EnsemblPlantsGene:TraesCS3A01G499100	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom	PANTHER:PTHR44374
PANTHER:PTHR44374:SF2	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360	SUPFAM:SSF54928
TIGR:cd12384	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr3A:+:724375946..724382329

Molecular Weight (calculated)

32525.6 Da

IEP (calculated)

8.359

GRAVY (calculated)

-0.100

Length

312 amino acids

Sequence
(BLAST)

001: MSMAHQAAAS GGDTRLTKVF VGGLAWETSK EGVRGHFERF GEILEAVVIA DKGTGRSKGY GFVTFREAEA AMRACLDPYP VIDGRRANCN LACLGVQRSK
101: APQPLPYLQP YAAVGHVHGG GNINTRAMKA AIAAAGAGGA SFVDHGIQQG IPAAAYNMYG YSPYFSDYGY QPLTYYQAYG GLAGGAQYQV FNGGAATAGT
201: AGLAMADPTG LYPYYQYGPA VSTAAAYSMM QYPQMYQYAA VGAPPESSPT AVSGLHQFIG AAAFEPNTGA QAGGMTLAQL TAPAPLAPAP QYQYRLVSPM
301: PIATPDQKKP LA

Best Arabidopsis Sequence Match ( AT1G22910.1 )
(BLAST)

001: MAGGIGLGDT TYTKVFVGGL AWETHKETMK KHFEQFGEIL EAVVITDKAS GRSKGYGFVT FREAEAARSA CVDATPVIDG RRANCNLASL GLQRSKPSTP
101: NHGGGGRINN MRVMMSTMQT GFGPPPPPQP PTFTHYPHLP LNLFGYSPYS PDYSSFPTNL YGMYGCTSGG QYGVYGNRNS GGGGLTAAAA SATPFYPCGG
201: GHGGVQFSQP QPFYHHLSSY NPHHYSPPTF SMQQGVTGFP LQPPLIPYR

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I321]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.