Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P04410_001 | |
| GSMUA_Achr7P21160_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G33470.1 | GSMUA_Achr1P04410_001 | AT3G56680.1 | 21798944 |
| AT1G33470.1 | GSMUA_Achr7P21160_001 | AT3G56680.1 | 21798944 |
| AT1G33470.1 | GSMUA_AchrUn_... | AT3G56680.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 86.3 | 85.98 |
| KRH75298 | Soybean | cytosol, nucleus | 28.89 | 78.79 |
| KRH13261 | Soybean | cytosol | 35.19 | 76.61 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 67.04 | 69.88 |
| VIT_18s0089g00920.t01 | Wine grape | nucleus | 68.52 | 68.77 |
| EES01849 | Sorghum | nucleus | 65.93 | 67.94 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 64.07 | 66.03 |
| KRH40033 | Soybean | nucleus | 65.93 | 65.44 |
| KRH23771 | Soybean | nucleus | 65.56 | 65.07 |
| PGSC0003DMT400008944 | Potato | nucleus | 60.0 | 61.36 |
| Solyc11g044470.1.1 | Tomato | mitochondrion, nucleus, plastid | 59.26 | 61.3 |
| TraesCS3D01G380100.1 | Wheat | nucleus | 66.67 | 60.81 |
| TraesCS3B01G419200.1 | Wheat | nucleus | 66.67 | 60.81 |
| Zm00001d042641_P001 | Maize | nucleus | 66.3 | 60.68 |
| TraesCS3A01G389600.1 | Wheat | nucleus | 66.67 | 60.61 |
| Os01t0876800-00 | Rice | nucleus | 66.67 | 60.0 |
| GSMUA_Achr4P09830_001 | Banana | mitochondrion | 29.26 | 52.32 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 64.07 | 50.88 |
| CDY69197 | Canola | nucleus | 42.22 | 50.67 |
| Bra024547.1-P | Field mustard | nucleus | 43.33 | 48.95 |
| CDX73279 | Canola | cytosol | 43.7 | 48.76 |
| CDY04769 | Canola | nucleus | 42.22 | 48.1 |
| AT1G33470.1 | Thale cress | cytosol | 42.96 | 47.35 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 27.04 | 45.91 |
| KRH62942 | Soybean | mitochondrion | 34.44 | 45.59 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 29.63 | 45.2 |
| Bra012350.1-P | Field mustard | nucleus | 41.48 | 44.98 |
| CDY25759 | Canola | nucleus | 41.11 | 44.58 |
| Os01t0958500-01 | Rice | nucleus | 46.67 | 40.65 |
| GSMUA_Achr8P24330_001 | Banana | nucleus, plastid | 42.96 | 40.0 |
| TraesCS3A01G499100.1 | Wheat | cytosol, nucleus, plastid | 45.19 | 39.1 |
| TraesCS3B01G562300.3 | Wheat | mitochondrion | 44.81 | 38.78 |
| Bra010203.1-P | Field mustard | nucleus | 43.7 | 38.69 |
| HORVU3Hr1G110370.1 | Barley | cytosol, mitochondrion, nucleus | 44.81 | 38.66 |
| TraesCS3D01G505900.1 | Wheat | mitochondrion | 44.81 | 38.29 |
| EES02078 | Sorghum | nucleus | 46.3 | 36.98 |
| Zm00001d042042_P001 | Maize | nucleus | 45.56 | 36.18 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 31.48 | 36.02 |
| AT1G22910.3 | Thale cress | nucleus | 44.81 | 34.87 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 31.11 | 34.85 |
| CDY67263 | Canola | nucleus | 42.22 | 34.76 |
| GSMUA_Achr5P17700_001 | Banana | cytosol | 11.85 | 34.41 |
| GSMUA_Achr11P... | Banana | nucleus | 33.33 | 33.96 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 32.96 | 33.71 |
| GSMUA_Achr3P13820_001 | Banana | cytosol | 32.96 | 31.9 |
| CDY13339 | Canola | mitochondrion | 18.52 | 29.76 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 59.63 | 24.14 |
| CDY21399 | Canola | mitochondrion | 12.96 | 24.14 |
| GSMUA_Achr4P32300_001 | Banana | nucleus | 11.11 | 20.41 |
| GSMUA_Achr10P... | Banana | nucleus | 17.04 | 19.91 |
| GSMUA_Achr7P00730_001 | Banana | cytosol | 13.33 | 19.89 |
| GSMUA_Achr10P... | Banana | nucleus | 22.59 | 18.32 |
| GSMUA_Achr10P... | Banana | nucleus | 15.93 | 17.34 |
| GSMUA_Achr7P13480_001 | Banana | nucleus | 21.48 | 17.21 |
| GSMUA_Achr9P12410_001 | Banana | nucleus | 20.74 | 16.72 |
| GSMUA_Achr9P12880_001 | Banana | cytosol | 13.33 | 15.65 |
| GSMUA_Achr1P09440_001 | Banana | cytosol | 19.63 | 15.63 |
| GSMUA_AchrUn_... | Banana | cytosol | 18.52 | 15.2 |
| GSMUA_Achr8P25380_001 | Banana | nucleus | 21.11 | 15.04 |
| GSMUA_Achr5P09540_001 | Banana | nucleus | 21.48 | 14.95 |
| GSMUA_Achr1P19260_001 | Banana | nucleus | 18.52 | 14.79 |
| GSMUA_Achr5P09550_001 | Banana | nucleus | 20.37 | 14.78 |
| GSMUA_Achr1P10970_001 | Banana | nucleus | 20.74 | 12.84 |
| GSMUA_Achr2P14710_001 | Banana | cytosol | 17.04 | 12.81 |
| GSMUA_Achr10P... | Banana | nucleus | 20.74 | 12.73 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 20.0 | 12.22 |
| GSMUA_Achr10P... | Banana | nucleus | 19.63 | 11.52 |
| GSMUA_AchrUn_... | Banana | nucleus | 17.78 | 11.19 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 20.37 | 11.0 |
| GSMUA_Achr6P15950_001 | Banana | nucleus | 18.89 | 10.94 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 17.41 | 10.83 |
| GSMUA_Achr4P24260_001 | Banana | cytosol | 12.96 | 10.64 |
| GSMUA_Achr4P28100_001 | Banana | nucleus | 17.41 | 10.63 |
| GSMUA_Achr4P09210_001 | Banana | nucleus | 17.04 | 10.41 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 19.63 | 7.81 |
| GSMUA_Achr5P17690_001 | Banana | nucleus | 11.48 | 7.67 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P17510_001 | EnsemblPlants:GSMUA_Achr6T17510_001 | EnsemblPlantsGene:GSMUA_Achr6G17510_001 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR44374 | PANTHER:PTHR44374:SF1 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000295ED2E | UniProt:M0T7U9 | MapMan:35.1 | : |
Description
RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G17510_001]
Coordinates
chr6:+:11797011..11799470
Molecular Weight (calculated)
28483.5 Da
IEP (calculated)
8.873
GRAVY (calculated)
-0.146
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MTPPTNVAGQ FGDTTYTKVF VGGLAWETQR DTMSKYFEQF GEILEAVVIT DKNTGRSKGY GFVTFREPEA AMRACIDPSP VIDGRRANCN LASLGLQRSK
101: PTTPLHGGSR NFRVVKSFQA GLQGGMGTAF ASAAAAAATA FPHYAIQQGL PYYVYGFSPY SAEYNYATSY YNMYGGAATQ YPLYGGAATG VAAGTTGYYP
201: YFQFGQGGAA AAYPHQGQGY GMQCPQMLQY SAMTTTAGVT GFPSSLLHGA PVSLAMSPAA QAVSSALKQA
101: PTTPLHGGSR NFRVVKSFQA GLQGGMGTAF ASAAAAAATA FPHYAIQQGL PYYVYGFSPY SAEYNYATSY YNMYGGAATQ YPLYGGAATG VAAGTTGYYP
201: YFQFGQGGAA AAYPHQGQGY GMQCPQMLQY SAMTTTAGVT GFPSSLLHGA PVSLAMSPAA QAVSSALKQA
001: MEDTTFTKVF VGGLAWETHK VSLRNYFEQF GDIVEAVVIT DKSSGRSKGY GFVTFCDPEA AQKACVDPAP VIDGRRANCN LAAFGVQRSK PSSPIHGHVG
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TSYYNVYGGA TAQHPMYGSG PMTGVAAAPA AGFYPYLQFA EGNGPVTGYA
201: PLHYPNHMFH YSAPGGNYPH HNGSPVSLAP SPVIPSVCFA VPQA
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TSYYNVYGGA TAQHPMYGSG PMTGVAAAPA AGFYPYLQFA EGNGPVTGYA
201: PLHYPNHMFH YSAPGGNYPH HNGSPVSLAP SPVIPSVCFA VPQA
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q67YS0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.