Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | cytosol | 85.25 | 87.84 |
| GSMUA_Achr1P19260_001 | Banana | nucleus | 76.4 | 76.63 |
| GSMUA_Achr8P25380_001 | Banana | nucleus | 85.55 | 76.52 |
| EES01076 | Sorghum | nucleus | 66.96 | 65.04 |
| Os08t0320100-01 | Rice | nucleus | 66.67 | 64.57 |
| KRH17717 | Soybean | nucleus | 65.78 | 63.35 |
| Zm00001d030579_P001 | Maize | mitochondrion | 64.6 | 62.93 |
| VIT_19s0015g00920.t01 | Wine grape | nucleus | 64.6 | 62.93 |
| PGSC0003DMT400044868 | Potato | nucleus | 61.36 | 60.82 |
| VIT_12s0057g01280.t01 | Wine grape | nucleus | 46.02 | 60.47 |
| VIT_18s0117g00150.t01 | Wine grape | nucleus | 64.01 | 60.45 |
| Solyc07g045240.2.1 | Tomato | nucleus | 60.18 | 59.48 |
| TraesCS6A01G291100.1 | Wheat | nucleus | 59.29 | 58.94 |
| TraesCS6D01G272500.1 | Wheat | nucleus | 60.18 | 58.79 |
| Bra039380.1-P | Field mustard | nucleus | 59.88 | 56.08 |
| CDY43360 | Canola | nucleus | 59.88 | 56.08 |
| CDY24201 | Canola | nucleus | 59.88 | 56.08 |
| AT3G13224.2 | Thale cress | nucleus | 59.0 | 55.87 |
| TraesCS6B01G321300.2 | Wheat | nucleus | 61.36 | 55.76 |
| GSMUA_Achr9P12880_001 | Banana | cytosol | 32.45 | 47.83 |
| GSMUA_Achr7P13480_001 | Banana | nucleus | 44.54 | 44.81 |
| GSMUA_Achr10P... | Banana | nucleus | 43.36 | 44.14 |
| GSMUA_Achr5P17700_001 | Banana | cytosol | 11.5 | 41.94 |
| PGSC0003DMT400044866 | Potato | extracellular | 61.06 | 38.76 |
| GSMUA_Achr10P... | Banana | nucleus | 27.14 | 37.1 |
| Solyc12g035280.1.1 | Tomato | cytosol, nucleus, plastid | 37.17 | 33.96 |
| GSMUA_Achr10P... | Banana | nucleus | 34.81 | 26.82 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 33.33 | 25.57 |
| GSMUA_Achr1P10970_001 | Banana | nucleus | 32.74 | 25.46 |
| GSMUA_Achr10P... | Banana | nucleus | 34.22 | 25.22 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 35.99 | 24.4 |
| GSMUA_Achr2P14710_001 | Banana | cytosol | 23.89 | 22.56 |
| GSMUA_Achr4P09830_001 | Banana | mitochondrion | 9.73 | 21.85 |
| GSMUA_Achr5P17690_001 | Banana | nucleus | 25.96 | 21.78 |
| GSMUA_Achr4P24260_001 | Banana | cytosol | 20.94 | 21.58 |
| GSMUA_Achr7P00730_001 | Banana | cytosol | 11.21 | 20.99 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 16.22 | 20.99 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 10.62 | 20.34 |
| GSMUA_Achr10P... | Banana | nucleus | 15.93 | 19.93 |
| GSMUA_Achr5P09550_001 | Banana | nucleus | 21.83 | 19.89 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 15.63 | 19.63 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 9.14 | 19.5 |
| GSMUA_Achr11P... | Banana | nucleus | 15.04 | 19.25 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 14.45 | 18.92 |
| GSMUA_Achr9P12410_001 | Banana | nucleus | 18.58 | 18.81 |
| GSMUA_Achr4P28100_001 | Banana | nucleus | 24.48 | 18.78 |
| GSMUA_Achr4P32300_001 | Banana | nucleus | 7.67 | 17.69 |
| GSMUA_Achr8P24330_001 | Banana | nucleus, plastid | 15.04 | 17.59 |
| GSMUA_Achr3P13820_001 | Banana | cytosol | 14.45 | 17.56 |
| GSMUA_Achr5P09540_001 | Banana | nucleus | 20.06 | 17.53 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 34.81 | 17.38 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 12.09 | 17.37 |
| GSMUA_Achr6P15950_001 | Banana | nucleus | 23.01 | 16.74 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 12.39 | 15.91 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 9.73 | 13.69 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 16.81 | 13.13 |
| GSMUA_Achr10P... | Banana | nucleus | 7.37 | 10.82 |
| GSMUA_AchrUn_... | Banana | nucleus | 13.57 | 10.72 |
| GSMUA_Achr4P09210_001 | Banana | nucleus | 12.39 | 9.5 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 14.45 | 7.35 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P09440_001 | EnsemblPlants:GSMUA_Achr1T09440_001 | EnsemblPlantsGene:GSMUA_Achr1G09440_001 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR45276 | PANTHER:PTHR45276:SF1 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00029602B1 | UniProt:M0RYF3 | MapMan:35.1 | : |
Description
RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G09440_001]
Coordinates
chr1:+:7258557..7262042
Molecular Weight (calculated)
35834.7 Da
IEP (calculated)
9.355
GRAVY (calculated)
-0.594
Length
339 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRMQDHDG ASPAKIFIGG LPKDTTLETF VKHFEKYGEI VDSVIMKDRN TNKPRGFGFI TYKDAAVVDQ VIEDTHVFNG KMVEIKRTIP KGVAPLKDFK
101: TRKIFVGGIP ITLTEDEFKN FFSEFGRVED HEIMRDHTTN RSRGFGFIVF EKEKDVDDLL AKKGNMIDLA GTKVEIKKAE PKKSANAPLS AFGGESRARH
201: YGDSFGGFGG SYGGFGGGYG PSSYRAPGGF GPRPGGYGGY GSVSGEYGGY AGGLGEYHAE SSLGYSSRFG SYGGGFGGGG GFGGGYGGGG VRGHGRETGG
301: YRGSSYGGGY DSSPGGYGLY GSRGGGYGGG ADRYHPYGR
101: TRKIFVGGIP ITLTEDEFKN FFSEFGRVED HEIMRDHTTN RSRGFGFIVF EKEKDVDDLL AKKGNMIDLA GTKVEIKKAE PKKSANAPLS AFGGESRARH
201: YGDSFGGFGG SYGGFGGGYG PSSYRAPGGF GPRPGGYGGY GSVSGEYGGY AGGLGEYHAE SSLGYSSRFG SYGGGFGGGG GFGGGYGGGG VRGHGRETGG
301: YRGSSYGGGY DSSPGGYGLY GSRGGGYGGG ADRYHPYGR
001: MGSRSRNDNF QSGDGASPGK IFIGGLHKDT TNTVFNKHFG KYGEITDSVI MRDRHTGQPR GFGFITFADP SVVDKVIEDT HVINGKQVEI KRTIPKGAGG
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LHL2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.