Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G291100.1 | Wheat | nucleus | 94.24 | 95.89 |
| TraesCS6B01G321300.2 | Wheat | nucleus | 98.27 | 91.42 |
| Os08t0320100-01 | Rice | nucleus | 77.23 | 76.57 |
| EES01076 | Sorghum | nucleus | 75.79 | 75.36 |
| Zm00001d030579_P001 | Maize | mitochondrion | 74.93 | 74.71 |
| GSMUA_AchrUn_... | Banana | cytosol | 58.21 | 61.4 |
| GSMUA_Achr1P19260_001 | Banana | nucleus | 59.37 | 60.95 |
| GSMUA_Achr1P09440_001 | Banana | cytosol | 58.79 | 60.18 |
| VIT_19s0015g00920.t01 | Wine grape | nucleus | 58.5 | 58.33 |
| PGSC0003DMT400044868 | Potato | nucleus | 55.91 | 56.73 |
| Solyc07g045240.2.1 | Tomato | nucleus | 55.62 | 56.27 |
| KRH17717 | Soybean | nucleus | 57.06 | 56.25 |
| VIT_18s0117g00150.t01 | Wine grape | nucleus | 56.77 | 54.87 |
| GSMUA_Achr8P25380_001 | Banana | nucleus | 58.79 | 53.83 |
| VIT_12s0057g01280.t01 | Wine grape | nucleus | 39.48 | 53.1 |
| CDY24201 | Canola | nucleus | 51.87 | 49.72 |
| AT3G13224.2 | Thale cress | nucleus | 51.3 | 49.72 |
| Bra039380.1-P | Field mustard | nucleus | 51.3 | 49.17 |
| CDY43360 | Canola | nucleus | 51.3 | 49.17 |
| TraesCS7D01G281300.1 | Wheat | nucleus | 49.28 | 48.17 |
| TraesCS6D01G173900.1 | Wheat | nucleus | 42.94 | 36.43 |
| PGSC0003DMT400044866 | Potato | extracellular | 55.62 | 36.14 |
| TraesCS7D01G362200.1 | Wheat | nucleus | 41.79 | 32.66 |
| Solyc12g035280.1.1 | Tomato | cytosol, nucleus, plastid | 33.72 | 31.54 |
| TraesCS4D01G152200.1 | Wheat | nucleus | 36.31 | 27.21 |
| TraesCS1D01G147600.1 | Wheat | nucleus | 34.01 | 25.99 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 32.56 | 24.04 |
| TraesCS1D01G237800.3 | Wheat | cytosol | 22.19 | 21.15 |
| TraesCS5D01G415400.1 | Wheat | nucleus | 20.17 | 20.23 |
| TraesCS2D01G256500.1 | Wheat | nucleus | 21.61 | 20.05 |
| TraesCS3D01G480300.1 | Wheat | cytosol | 21.33 | 19.84 |
| TraesCS3D01G380100.1 | Wheat | nucleus | 16.71 | 19.59 |
| TraesCS4D01G225900.1 | Wheat | nucleus | 13.83 | 19.28 |
| TraesCS7D01G392500.1 | Wheat | cytosol, nucleus, plastid | 13.83 | 16.72 |
| TraesCS6D01G258900.4 | Wheat | plastid | 13.83 | 16.67 |
| TraesCS3D01G232300.1 | Wheat | nucleus | 21.04 | 16.59 |
| TraesCS3D01G505900.1 | Wheat | mitochondrion | 14.41 | 15.82 |
| TraesCS3D01G186500.1 | Wheat | nucleus | 20.46 | 14.79 |
| TraesCS7D01G180800.1 | Wheat | nucleus | 12.68 | 14.62 |
| TraesCS4D01G198000.3 | Wheat | cytosol | 13.26 | 14.42 |
| TraesCS6D01G297300.1 | Wheat | plastid | 12.68 | 14.1 |
| TraesCS2D01G529100.1 | Wheat | nucleus | 16.71 | 11.39 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G272500.1 | EnsemblPlantsGene:TraesCS6D01G272500 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR45276 |
| PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | MapMan:35.1 |
Description
No Description!
Coordinates
chr6D:+:381344459..381347004
Molecular Weight (calculated)
36818.8 Da
IEP (calculated)
9.571
GRAVY (calculated)
-0.597
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MKQQDGASPA KMFIGGLSRQ TSMGTFKEYF GKYGEIIDAV IMKDRHTQKP RGFGFITYSD PAIVDRVIED NHVIDGKQVE IKRTIPKGAA PLKDFKTKKI
101: FVGGLPTALT DGEFKDFFSK FGKVVEHEII CDHSTNRSRG FGFIVFDAEK TVDELLAKKG NKIDLNGTQV EIKKAEPKKP SNPPHSLDSK PRRSPYADGY
201: DGFASRYNNG GRFAPYKSPG FGARPGSYSS AYVPGDYSSS YGGYDGAFGG YHGESSLYTS RFGGSYGGGL GGAYGRDAVP YGGGLGGAYG RDAVPYGTSS
301: YGPSYDSSGA SADPSVRSGV GGLYGARGGY GSSSGGGATG RYHPYAG
101: FVGGLPTALT DGEFKDFFSK FGKVVEHEII CDHSTNRSRG FGFIVFDAEK TVDELLAKKG NKIDLNGTQV EIKKAEPKKP SNPPHSLDSK PRRSPYADGY
201: DGFASRYNNG GRFAPYKSPG FGARPGSYSS AYVPGDYSSS YGGYDGAFGG YHGESSLYTS RFGGSYGGGL GGAYGRDAVP YGGGLGGAYG RDAVPYGTSS
301: YGPSYDSSGA SADPSVRSGV GGLYGARGGY GSSSGGGATG RYHPYAG
001: MGSRSRNDNF QSGDGASPGK IFIGGLHKDT TNTVFNKHFG KYGEITDSVI MRDRHTGQPR GFGFITFADP SVVDKVIEDT HVINGKQVEI KRTIPKGAGG
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV SLYKWGLEFW FMMTYLSWFQ
201: FDIFSLFLSL YTFNLVRILP TSLPNVRSLS Q
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV SLYKWGLEFW FMMTYLSWFQ
201: FDIFSLFLSL YTFNLVRILP TSLPNVRSLS Q
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LHL2]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.