Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | cytosol | 77.22 | 79.33 |
| GSMUA_Achr1P09440_001 | Banana | cytosol | 76.63 | 76.4 |
| GSMUA_Achr8P25380_001 | Banana | nucleus | 78.99 | 70.45 |
| EES01076 | Sorghum | nucleus | 68.64 | 66.48 |
| Os08t0320100-01 | Rice | nucleus | 68.34 | 66.0 |
| Zm00001d030579_P001 | Maize | mitochondrion | 66.57 | 64.66 |
| VIT_19s0015g00920.t01 | Wine grape | nucleus | 65.09 | 63.22 |
| PGSC0003DMT400044868 | Potato | nucleus | 63.02 | 62.28 |
| Solyc07g045240.2.1 | Tomato | nucleus | 62.72 | 61.81 |
| KRH17717 | Soybean | nucleus | 63.61 | 61.08 |
| TraesCS6A01G291100.1 | Wheat | nucleus | 60.95 | 60.41 |
| VIT_18s0117g00150.t01 | Wine grape | nucleus | 63.61 | 59.89 |
| VIT_12s0057g01280.t01 | Wine grape | nucleus | 45.56 | 59.69 |
| TraesCS6D01G272500.1 | Wheat | nucleus | 60.95 | 59.37 |
| TraesCS6B01G321300.2 | Wheat | nucleus | 62.43 | 56.57 |
| CDY24201 | Canola | nucleus | 60.35 | 56.35 |
| AT3G13224.2 | Thale cress | nucleus | 59.17 | 55.87 |
| Bra039380.1-P | Field mustard | nucleus | 59.76 | 55.8 |
| CDY43360 | Canola | nucleus | 59.76 | 55.8 |
| GSMUA_Achr9P12880_001 | Banana | cytosol | 34.62 | 50.87 |
| GSMUA_Achr5P17700_001 | Banana | cytosol | 12.72 | 46.24 |
| GSMUA_Achr7P13480_001 | Banana | nucleus | 44.67 | 44.81 |
| GSMUA_Achr10P... | Banana | nucleus | 43.49 | 44.14 |
| PGSC0003DMT400044866 | Potato | extracellular | 62.72 | 39.7 |
| GSMUA_Achr10P... | Banana | nucleus | 27.81 | 37.9 |
| Solyc12g035280.1.1 | Tomato | cytosol, nucleus, plastid | 36.98 | 33.69 |
| GSMUA_Achr10P... | Banana | nucleus | 35.21 | 27.05 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 34.02 | 26.02 |
| GSMUA_Achr10P... | Banana | nucleus | 35.21 | 25.87 |
| GSMUA_Achr4P09830_001 | Banana | mitochondrion | 11.54 | 25.83 |
| GSMUA_Achr1P10970_001 | Banana | nucleus | 33.14 | 25.69 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 36.98 | 25.0 |
| GSMUA_Achr7P00730_001 | Banana | cytosol | 12.72 | 23.76 |
| GSMUA_Achr2P14710_001 | Banana | cytosol | 24.26 | 22.84 |
| GSMUA_Achr4P32300_001 | Banana | nucleus | 9.47 | 21.77 |
| GSMUA_Achr4P24260_001 | Banana | cytosol | 21.01 | 21.58 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 11.24 | 21.47 |
| GSMUA_Achr5P17690_001 | Banana | nucleus | 25.15 | 21.04 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 16.27 | 20.99 |
| GSMUA_Achr5P09550_001 | Banana | nucleus | 22.49 | 20.43 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 9.47 | 20.13 |
| GSMUA_Achr4P28100_001 | Banana | nucleus | 25.74 | 19.68 |
| GSMUA_Achr9P12410_001 | Banana | nucleus | 18.64 | 18.81 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 14.2 | 18.53 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 14.79 | 18.52 |
| GSMUA_Achr10P... | Banana | nucleus | 14.79 | 18.45 |
| GSMUA_Achr3P13820_001 | Banana | cytosol | 15.09 | 18.28 |
| GSMUA_Achr11P... | Banana | nucleus | 14.2 | 18.11 |
| GSMUA_Achr8P24330_001 | Banana | nucleus, plastid | 15.38 | 17.93 |
| GSMUA_Achr5P09540_001 | Banana | nucleus | 20.41 | 17.78 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 35.5 | 17.67 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 12.13 | 17.37 |
| GSMUA_Achr6P15950_001 | Banana | nucleus | 23.67 | 17.17 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 12.72 | 16.29 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 17.75 | 13.82 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 9.47 | 13.28 |
| GSMUA_AchrUn_... | Banana | nucleus | 16.27 | 12.82 |
| GSMUA_Achr10P... | Banana | nucleus | 7.99 | 11.69 |
| GSMUA_Achr4P09210_001 | Banana | nucleus | 14.5 | 11.09 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 14.79 | 7.5 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P19260_001 | EnsemblPlants:GSMUA_Achr1T19260_001 | EnsemblPlantsGene:GSMUA_Achr1G19260_001 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR45276 | PANTHER:PTHR45276:SF1 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000295C29D | UniProt:M0S184 | MapMan:35.1 | : |
Description
Putative RNA-binding protein Musashi homolog 1 [Source:GMGC_GENE;Acc:GSMUA_Achr1G19260_001]
Coordinates
chr1:-:14394303..14398626
Molecular Weight (calculated)
35726.3 Da
IEP (calculated)
9.341
GRAVY (calculated)
-0.642
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSRSQEQDG ASPAKIFVGG LPKDTTMATF EQHFEKYGKI VDKVIMRDRN TNKPRGFGFI TFDDPSVVDK VIEDTHAING KTVEIKRTIP KAAAPLKDFK
101: TRKIFVGGIP TSLTEDEFKD FFSQFGKVDD HEIIRDHTTN RSRGFGFIVF ESEKVVDDLL AKKGNMIDLA GSQVEIKKAE PKKPSNPSSA FGSEPRARHF
201: GDSFGGYGSY SGYAGGAYGP SSYRTPGGFG PRPGGYGGYS SISGDFDGGY GGFAGGLGDY RTESSFGYSS RLGSYGGGYG GGYGGSGLGG YGREAGGYAG
301: SSYSRGYESP GAGYGSGGLY GGRGSYGGGA GRYHPYGR
101: TRKIFVGGIP TSLTEDEFKD FFSQFGKVDD HEIIRDHTTN RSRGFGFIVF ESEKVVDDLL AKKGNMIDLA GSQVEIKKAE PKKPSNPSSA FGSEPRARHF
201: GDSFGGYGSY SGYAGGAYGP SSYRTPGGFG PRPGGYGGYS SISGDFDGGY GGFAGGLGDY RTESSFGYSS RLGSYGGGYG GGYGGSGLGG YGREAGGYAG
301: SSYSRGYESP GAGYGSGGLY GGRGSYGGGA GRYHPYGR
001: MGSRSRNDNF QSGDGASPGK IFIGGLHKDT TNTVFNKHFG KYGEITDSVI MRDRHTGQPR GFGFITFADP SVVDKVIEDT HVINGKQVEI KRTIPKGAGG
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LHL2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.