Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_08s0056g00690.t01 | Wine grape | nucleus | 56.22 | 56.59 |
| KRG94993 | Soybean | nucleus | 54.08 | 52.61 |
| CDX76015 | Canola | nucleus | 33.69 | 51.48 |
| KRH66628 | Soybean | nucleus | 53.22 | 51.03 |
| CDY06947 | Canola | nucleus | 47.0 | 50.93 |
| Bra007277.1-P | Field mustard | nucleus | 48.93 | 50.78 |
| CDX72106 | Canola | nucleus | 49.36 | 50.55 |
| CDY27186 | Canola | nucleus | 48.5 | 50.33 |
| Bra016954.1-P | Field mustard | nucleus | 47.21 | 50.0 |
| CDY57580 | Canola | nucleus | 47.21 | 49.66 |
| Bra014667.1-P | Field mustard | nucleus | 32.4 | 49.51 |
| AT2G41060.3 | Thale cress | nucleus | 47.64 | 49.22 |
| Solyc01g008970.2.1 | Tomato | nucleus | 39.27 | 48.67 |
| PGSC0003DMT400058431 | Potato | nucleus | 50.86 | 48.37 |
| AT3G56860.10 | Thale cress | nucleus | 49.36 | 48.12 |
| KRH14673 | Soybean | nucleus | 50.0 | 47.17 |
| VIT_06s0009g01180.t01 | Wine grape | mitochondrion, nucleus, plastid | 51.93 | 46.72 |
| KRH73477 | Soybean | nucleus | 49.57 | 46.57 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 41.85 | 44.93 |
| GSMUA_Achr10P... | Banana | nucleus | 19.31 | 38.96 |
| GSMUA_Achr5P09550_001 | Banana | nucleus | 30.04 | 37.63 |
| CDY47382 | Canola | golgi, plastid | 32.4 | 36.3 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.05 | 35.9 |
| GSMUA_Achr4P09210_001 | Banana | nucleus | 33.48 | 35.29 |
| GSMUA_Achr5P09540_001 | Banana | nucleus | 28.54 | 34.28 |
| GSMUA_Achr9P12410_001 | Banana | nucleus | 22.53 | 31.34 |
| GSMUA_Achr5P17700_001 | Banana | cytosol | 6.22 | 31.18 |
| GSMUA_Achr4P09830_001 | Banana | mitochondrion | 9.23 | 28.48 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 9.66 | 28.3 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 9.66 | 25.42 |
| GSMUA_AchrUn_... | Banana | cytosol | 17.38 | 24.62 |
| GSMUA_Achr1P19260_001 | Banana | nucleus | 17.17 | 23.67 |
| GSMUA_Achr7P00730_001 | Banana | cytosol | 9.01 | 23.2 |
| GSMUA_Achr1P09440_001 | Banana | cytosol | 16.74 | 23.01 |
| GSMUA_Achr7P13480_001 | Banana | nucleus | 16.09 | 22.26 |
| GSMUA_Achr10P... | Banana | nucleus | 11.8 | 22.18 |
| GSMUA_Achr9P12880_001 | Banana | cytosol | 10.73 | 21.74 |
| GSMUA_Achr10P... | Banana | nucleus | 15.24 | 21.32 |
| GSMUA_Achr4P32300_001 | Banana | nucleus | 6.65 | 21.09 |
| GSMUA_Achr8P24330_001 | Banana | nucleus, plastid | 12.88 | 20.69 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 11.59 | 20.61 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 10.52 | 20.33 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 11.16 | 20.08 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 10.09 | 19.92 |
| GSMUA_Achr8P25380_001 | Banana | nucleus | 16.09 | 19.79 |
| GSMUA_Achr11P... | Banana | nucleus | 11.16 | 19.62 |
| GSMUA_Achr10P... | Banana | nucleus | 11.37 | 19.56 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 10.73 | 18.94 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 10.94 | 18.89 |
| GSMUA_Achr3P13820_001 | Banana | cytosol | 10.94 | 18.28 |
| GSMUA_Achr10P... | Banana | nucleus | 16.09 | 17.05 |
| GSMUA_Achr10P... | Banana | nucleus | 16.52 | 16.74 |
| GSMUA_Achr2P14710_001 | Banana | cytosol | 12.88 | 16.71 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 15.45 | 16.29 |
| GSMUA_Achr4P24260_001 | Banana | cytosol | 11.16 | 15.81 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 16.52 | 15.4 |
| GSMUA_Achr1P10970_001 | Banana | nucleus | 14.16 | 15.14 |
| GSMUA_Achr4P28100_001 | Banana | nucleus | 12.45 | 13.12 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 15.02 | 10.31 |
| GSMUA_Achr5P17690_001 | Banana | nucleus | 8.8 | 10.15 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 10.52 | 7.35 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P15950_001 | EnsemblPlants:GSMUA_Achr6T15950_001 | EnsemblPlantsGene:GSMUA_Achr6G15950_001 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR44578 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000296C44B | UniProt:M0T7E3 | MapMan:35.1 | : | : |
Description
Putative Heterogeneous nuclear ribonucleoprotein A/B [Source:GMGC_GENE;Acc:GSMUA_Achr6G15950_001]
Coordinates
chr6:-:10653504..10657339
Molecular Weight (calculated)
48155.7 Da
IEP (calculated)
6.617
GRAVY (calculated)
-0.325
Length
466 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKKRKLTPS SAVKAPAPVV EPKEEPVQEE SGPDVAIDES QEEQTPTGAD ANPPVHENAQ SDAASEDLGG ASAGGVGVGN DAEDVVENDP TSIQKLLEPF
101: PRDHLVELLR DAAVRHPDVL AEIHRIADLD PAHRKIFVHG LGWDTNAETL TAAFRQYGEI EDCNAVMDKA TGKSKGYGFI LFKHRAGARR ALEQPQKKIG
201: NRVTACQLAS AGPVPPPAPP VSEYTQRKIF VSNVGAEIDP QKLLQFFAKF GEIEEGPLGL DKLTGKPKGF ALFVYKTIES AKKALEEPHK NFDGHILHCQ
301: KAIDGPKPNK LGFQFQATAA HHGSLHQVAG AGHLMAPSAS GLGFNQASQP AAAAVAAAAG LNPALGQALT AFLATQGAGL GLTNLVAGSV VNQGVPGSLA
401: NSSGHGLNSG YGGGLGGNIN TGVIGGYGSQ AHTQGGYGNA SIGQGGSGRN QTGFGQMGGL GPYLGR
101: PRDHLVELLR DAAVRHPDVL AEIHRIADLD PAHRKIFVHG LGWDTNAETL TAAFRQYGEI EDCNAVMDKA TGKSKGYGFI LFKHRAGARR ALEQPQKKIG
201: NRVTACQLAS AGPVPPPAPP VSEYTQRKIF VSNVGAEIDP QKLLQFFAKF GEIEEGPLGL DKLTGKPKGF ALFVYKTIES AKKALEEPHK NFDGHILHCQ
301: KAIDGPKPNK LGFQFQATAA HHGSLHQVAG AGHLMAPSAS GLGFNQASQP AAAAVAAAAG LNPALGQALT AFLATQGAGL GLTNLVAGSV VNQGVPGSLA
401: NSSGHGLNSG YGGGLGGNIN TGVIGGYGSQ AHTQGGYGNA SIGQGGSGRN QTGFGQMGGL GPYLGR
001: MTKKRKLEGE ESNEAEEPSQ KLKQTPEEEQ QLVIKNQDNQ GDVEEVEYEE VEEEQEEEVE DDDDEDDGDE NEDQTDGNRI EAAATSGSGN QEDDDDEPIQ
101: DLLEPFSKEQ VLSLLKEAAE KHVDVANRIR EVADEDPVHR KIFVHGLGWD TKTETLIEAF KQYGEIEDCK AVFDKISGKS KGYGFILYKS RSGARNALKQ
201: PQKKIGSRMT ACQLASKGPV FGGAPIAAAA VSAPAQHSNS EHTQKKIYVS NVGAELDPQK LLMFFSKFGE IEEGPLGLDK YTGRPKGFCL FVYKSSESAK
301: RALEEPHKTF EGHILHCQKA IDGPKPGKQQ QHHHNPHAYN NPRYQRNDNN GYGPPGGHGH LMAGNPAGMG GPTAQVINPA IGQALTALLA SQGAGLAFNP
401: AIGQALLGSL GTAAGVNPGN GVGMPTGYGT QAMAPGTMPG YGTQPGLQGG YQTPQPGQGG TSRGQHGVGP YGTPYMGH
101: DLLEPFSKEQ VLSLLKEAAE KHVDVANRIR EVADEDPVHR KIFVHGLGWD TKTETLIEAF KQYGEIEDCK AVFDKISGKS KGYGFILYKS RSGARNALKQ
201: PQKKIGSRMT ACQLASKGPV FGGAPIAAAA VSAPAQHSNS EHTQKKIYVS NVGAELDPQK LLMFFSKFGE IEEGPLGLDK YTGRPKGFCL FVYKSSESAK
301: RALEEPHKTF EGHILHCQKA IDGPKPGKQQ QHHHNPHAYN NPRYQRNDNN GYGPPGGHGH LMAGNPAGMG GPTAQVINPA IGQALTALLA SQGAGLAFNP
401: AIGQALLGSL GTAAGVNPGN GVGMPTGYGT QAMAPGTMPG YGTQPGLQGG YQTPQPGQGG TSRGQHGVGP YGTPYMGH
Arabidopsis Description
UBA2AUBP1-associated protein 2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LES2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.