Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P04410_001 | |
| GSMUA_Achr7P21160_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G33470.1 | GSMUA_Achr1P04410_001 | AT3G56680.1 | 21798944 |
| AT1G33470.1 | GSMUA_Achr7P21160_001 | AT3G56680.1 | 21798944 |
| AT1G33470.1 | GSMUA_AchrUn_... | AT3G56680.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P08440_001 | Banana | nucleus | 81.68 | 82.63 |
| KRH75298 | Soybean | cytosol, nucleus | 27.86 | 73.74 |
| KRH13261 | Soybean | cytosol | 33.59 | 70.97 |
| VIT_18s0089g00920.t01 | Wine grape | nucleus | 68.7 | 66.91 |
| EES01849 | Sorghum | nucleus | 66.41 | 66.41 |
| GSMUA_Achr10P... | Banana | nucleus | 68.32 | 66.05 |
| KRH23771 | Soybean | nucleus | 67.94 | 65.44 |
| KRH40033 | Soybean | nucleus | 67.18 | 64.71 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 66.03 | 64.07 |
| Os01t0876800-00 | Rice | nucleus | 69.85 | 61.0 |
| Solyc11g044470.1.1 | Tomato | mitochondrion, nucleus, plastid | 60.31 | 60.54 |
| PGSC0003DMT400008944 | Potato | nucleus | 60.69 | 60.23 |
| Zm00001d042641_P001 | Maize | nucleus | 66.41 | 58.98 |
| TraesCS3B01G419200.1 | Wheat | nucleus | 66.41 | 58.78 |
| TraesCS3D01G380100.1 | Wheat | nucleus | 66.41 | 58.78 |
| TraesCS3A01G389600.1 | Wheat | nucleus | 66.03 | 58.25 |
| GSMUA_Achr4P09830_001 | Banana | mitochondrion | 30.15 | 52.32 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 64.89 | 50.0 |
| CDY69197 | Canola | nucleus | 41.98 | 48.89 |
| Bra024547.1-P | Field mustard | nucleus | 42.75 | 46.86 |
| CDY04769 | Canola | nucleus | 41.98 | 46.41 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 27.86 | 45.91 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 30.92 | 45.76 |
| CDX73279 | Canola | cytosol | 41.98 | 45.45 |
| AT1G33470.1 | Thale cress | cytosol | 41.98 | 44.9 |
| Bra012350.1-P | Field mustard | nucleus | 41.6 | 43.78 |
| CDY25759 | Canola | nucleus | 41.22 | 43.37 |
| KRH62942 | Soybean | mitochondrion | 32.44 | 41.67 |
| GSMUA_Achr8P24330_001 | Banana | nucleus, plastid | 45.04 | 40.69 |
| Os01t0958500-01 | Rice | nucleus | 45.8 | 38.71 |
| TraesCS3B01G562300.3 | Wheat | mitochondrion | 45.42 | 38.14 |
| HORVU3Hr1G110370.1 | Barley | cytosol, mitochondrion, nucleus | 45.04 | 37.7 |
| TraesCS3A01G499100.1 | Wheat | cytosol, nucleus, plastid | 44.66 | 37.5 |
| TraesCS3D01G505900.1 | Wheat | mitochondrion | 45.04 | 37.34 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 33.97 | 36.93 |
| Bra010203.1-P | Field mustard | nucleus | 42.75 | 36.72 |
| GSMUA_Achr5P17700_001 | Banana | cytosol | 12.98 | 36.56 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 32.06 | 35.59 |
| GSMUA_Achr11P... | Banana | nucleus | 35.88 | 35.47 |
| EES02078 | Sorghum | nucleus | 45.42 | 35.21 |
| Zm00001d042042_P001 | Maize | nucleus | 44.66 | 34.41 |
| AT1G22910.3 | Thale cress | nucleus | 45.42 | 34.29 |
| CDY67263 | Canola | nucleus | 41.98 | 33.54 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 32.82 | 32.58 |
| GSMUA_Achr3P13820_001 | Banana | cytosol | 34.35 | 32.26 |
| CDY13339 | Canola | mitochondrion | 19.08 | 29.76 |
| CDY21399 | Canola | mitochondrion | 14.12 | 25.52 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 56.11 | 22.04 |
| GSMUA_Achr7P00730_001 | Banana | cytosol | 14.5 | 20.99 |
| GSMUA_Achr4P32300_001 | Banana | nucleus | 11.45 | 20.41 |
| GSMUA_Achr10P... | Banana | nucleus | 17.18 | 19.48 |
| GSMUA_Achr7P13480_001 | Banana | nucleus | 23.28 | 18.1 |
| GSMUA_Achr10P... | Banana | nucleus | 16.79 | 17.74 |
| GSMUA_Achr10P... | Banana | nucleus | 22.14 | 17.42 |
| GSMUA_Achr9P12410_001 | Banana | nucleus | 21.37 | 16.72 |
| GSMUA_Achr1P19260_001 | Banana | nucleus | 20.99 | 16.27 |
| GSMUA_Achr1P09440_001 | Banana | cytosol | 20.99 | 16.22 |
| GSMUA_AchrUn_... | Banana | cytosol | 20.23 | 16.11 |
| GSMUA_Achr9P12880_001 | Banana | cytosol | 13.74 | 15.65 |
| GSMUA_Achr8P25380_001 | Banana | nucleus | 22.14 | 15.3 |
| GSMUA_Achr5P09550_001 | Banana | nucleus | 21.37 | 15.05 |
| GSMUA_Achr5P09540_001 | Banana | nucleus | 22.14 | 14.95 |
| GSMUA_Achr1P10970_001 | Banana | nucleus | 22.52 | 13.53 |
| GSMUA_Achr2P14710_001 | Banana | cytosol | 17.56 | 12.81 |
| GSMUA_Achr10P... | Banana | nucleus | 21.37 | 12.73 |
| GSMUA_Achr10P... | Banana | nucleus | 20.99 | 11.96 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 19.47 | 11.75 |
| GSMUA_Achr6P15950_001 | Banana | nucleus | 20.61 | 11.59 |
| GSMUA_AchrUn_... | Banana | nucleus | 18.7 | 11.42 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 19.08 | 11.31 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 21.37 | 11.2 |
| GSMUA_Achr4P28100_001 | Banana | nucleus | 17.56 | 10.41 |
| GSMUA_Achr4P09210_001 | Banana | nucleus | 17.56 | 10.41 |
| GSMUA_Achr4P24260_001 | Banana | cytosol | 12.6 | 10.03 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 21.37 | 8.25 |
| GSMUA_Achr5P17690_001 | Banana | nucleus | 10.69 | 6.93 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P21850_001 | EnsemblPlants:GSMUA_Achr3T21850_001 | EnsemblPlantsGene:GSMUA_Achr3G21850_001 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR44374 | PANTHER:PTHR44374:SF1 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0002966069 | UniProt:M0SGQ1 | MapMan:35.1 | : |
Description
RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G21850_001]
Coordinates
chr3:+:22819620..22823292
Molecular Weight (calculated)
27593.3 Da
IEP (calculated)
8.893
GRAVY (calculated)
-0.117
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPSLAGQFG DTTYTKIFVG GLAWETQSET VRQHFEQFGE ILEAVVITDK NTGRSKGYGF VTFREPAAAT RACVDPSPVI DGRRANCNLA SLGAQRSRPT
101: TPPYGGNRSF RVVKSFHTGY QGGMGAAFPS PASFPHYAIQ HGVPYGLLYG YSPFSSDYSY PAGYYSVYGG ATAQYPVYGA AAGIMTGNTA FYPYFQFGQG
201: SGGTATAMAS GHGYSVPYPP VLHYSAVAST AGLAGLVQHF GGPLSIAPTP PAHAVCFPLK QA
101: TPPYGGNRSF RVVKSFHTGY QGGMGAAFPS PASFPHYAIQ HGVPYGLLYG YSPFSSDYSY PAGYYSVYGG ATAQYPVYGA AAGIMTGNTA FYPYFQFGQG
201: SGGTATAMAS GHGYSVPYPP VLHYSAVAST AGLAGLVQHF GGPLSIAPTP PAHAVCFPLK QA
001: MEDTTFTKVF VGGLAWETHK VSLRNYFEQF GDIVEAVVIT DKSSGRSKGY GFVTFCDPEA AQKACVDPAP VIDGRRANCN LAAFGVQRSK PSSPIHGHVG
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TSYYNVYGGA TAQHPMYGSG PMTGVAAAPA AGFYPYLQFA EGNGPVTGYA
201: PLHYPNHMFH YSAPGGNYPH HNGSPVSLAP SPVIPSVCFA VPQA
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TSYYNVYGGA TAQHPMYGSG PMTGVAAAPA AGFYPYLQFA EGNGPVTGYA
201: PLHYPNHMFH YSAPGGNYPH HNGSPVSLAP SPVIPSVCFA VPQA
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q67YS0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.