Factsheet for GSMUA_Achr4P28100_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P32300_001	Banana	nucleus	17.65	53.06
GSMUA_Achr5P17700_001	Banana	cytosol	9.5	45.16
GSMUA_Achr10P...	Banana	nucleus	21.49	38.31
Zm00001d034200_P001	Maize	nucleus	14.25	36.84
Zm00001d034201_P001	Maize	nucleus	19.0	33.47
TraesCS5A01G405300.1	Wheat	nucleus	26.24	32.31
TraesCS5D01G415400.1	Wheat	nucleus	25.11	32.08
GSMUA_Achr7P00730_001	Banana	cytosol	13.12	32.04
Zm00001d018730_P001	Maize	nucleus	26.7	31.55
Zm00001d007839_P001	Maize	cytosol	26.24	31.35
TraesCS5B01G410100.1	Wheat	nucleus	24.89	31.34
EER95824	Sorghum	cytosol	26.92	31.23
Os07t0124600-01	Rice	nucleus	26.24	30.77
KXG37469	Sorghum	cytosol	21.04	30.69
HORVU5Hr1G098440.5	Barley	cytosol, nucleus	25.11	30.66
HORVU2Hr1G061380.2	Barley	nucleus	25.34	30.11
TraesCS2A01G267500.1	Wheat	nucleus	25.34	30.11
TraesCS2D01G256500.1	Wheat	nucleus	25.34	29.95
GSMUA_Achr9P12880_001	Banana	cytosol	14.93	28.7
GSMUA_Achr7P13480_001	Banana	nucleus	20.36	26.71
GSMUA_Achr1P19260_001	Banana	nucleus	19.68	25.74
GSMUA_Achr10P...	Banana	nucleus	25.57	25.68
GSMUA_Achr10P...	Banana	nucleus	19.23	25.53
GSMUA_Achr1P10970_001	Banana	nucleus	25.11	25.46
GSMUA_Achr10P...	Banana	nucleus	25.57	24.57
GSMUA_Achr1P09440_001	Banana	cytosol	18.78	24.48
GSMUA_Achr4P33100_001	Banana	nucleus	24.43	24.43
GSMUA_AchrUn_...	Banana	cytosol	18.1	24.32
GSMUA_Achr8P25380_001	Banana	nucleus	19.91	23.22
GSMUA_Achr4P09830_001	Banana	mitochondrion	7.92	23.18
GSMUA_Achr6P10970_001	Banana	nucleus	26.02	23.0
GSMUA_Achr2P14710_001	Banana	cytosol	16.74	20.61
GSMUA_Achr9P12410_001	Banana	nucleus	15.38	20.3
GSMUA_Achr5P17690_001	Banana	nucleus	18.55	20.3
GSMUA_Achr4P24260_001	Banana	cytosol	14.93	20.06
GSMUA_Achr3P06540_001	Banana	nucleus, plastid	6.56	18.24
GSMUA_Achr11P...	Banana	nucleus	10.86	18.11
GSMUA_Achr10P...	Banana	nucleus	10.86	17.71
GSMUA_Achr3P21850_001	Banana	nucleus	10.41	17.56
GSMUA_Achr6P17510_001	Banana	cytosol, mitochondrion, nucleus	10.63	17.41
GSMUA_Achr9P14920_001	Banana	plastid	6.79	16.95
GSMUA_Achr3P02300_001	Banana	nucleus	26.02	16.94
GSMUA_Achr8P08440_001	Banana	nucleus	9.5	16.22
GSMUA_Achr8P24330_001	Banana	nucleus, plastid	10.63	16.21
GSMUA_Achr5P09540_001	Banana	nucleus	13.57	15.46
GSMUA_Achr5P09550_001	Banana	nucleus	12.67	15.05
GSMUA_AchrUn_...	Banana	mitochondrion	7.47	13.69
GSMUA_Achr3P13820_001	Banana	cytosol	8.37	13.26
GSMUA_Achr5P05400_001	Banana	mitochondrion	7.92	13.26
GSMUA_Achr10P...	Banana	mitochondrion, nucleus	12.67	12.9
GSMUA_Achr8P23460_001	Banana	nucleus	6.79	12.71
GSMUA_Achr6P15950_001	Banana	nucleus	13.12	12.45
GSMUA_Achr4P09210_001	Banana	nucleus	11.76	11.76
GSMUA_Achr10P...	Banana	nucleus	6.11	11.69
GSMUA_AchrUn_...	Banana	nucleus	10.86	11.19
GSMUA_Achr6P24180_001	Banana	cytosol	10.41	6.9
CDX69277	Canola	mitochondrion	2.49	5.91

Protein Annotations

EnsemblPlants:GSMUA_Achr4P28100_001	EnsemblPlants:GSMUA_Achr4T28100_001	EnsemblPlantsGene:GSMUA_Achr4G28100_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44291	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0002949B03	UniProt:M0SSS2	MapMan:35.1	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G28100_001]

Coordinates

chr4:-:26637386..26642607

Molecular Weight (calculated)

49230.7 Da

IEP (calculated)

8.992

GRAVY (calculated)

-0.496

Length

442 amino acids

Sequence
(BLAST)

001: MESLSSSTLT SGTSLAASAW DGGRLFVGGI SSDTREETLA EHFERYGEVK EVVVLRNRVT GSGRGFGFVQ FANLEGPERA LKEAKHVIHG RTVEVKRAIP
101: RGEQRQNQQS RNAHQDGGSS GSSRITGNSG KQNGSHINSK KIFIGGLAGD VTHQELKSYF EKFGSVVDTV VMYDSATQRP RGFGFITFSS EEPVAAVLKN
201: RHHKLNGKLV EVKIAVPKDY SDCTNNRNSE NYYNVSAFGG QCERWPVYGT YQGYMHPYYG YPNYVTTPFS PYLYGGLYGG GYNNGGLYGI GHGCLLHSPR
301: NTWNISKRMV DFHTYPPYFS RDYRSYDRGH GFDDGNENKD GLGVQTTVKS VTDSQVTLGQ HWIPGSSFMP TIGTWIGCYR IAGHWIHKTP HLQLRIILKP
401: WRWTSDAASL LTCSCQSSWS LFSIVSIAIE MNKISTDFFC YT

Best Arabidopsis Sequence Match ( AT4G26650.1 )
(BLAST)

001: MNPEEQKMES ASDLGKLFIG GISWDTDEER LQEYFGKYGD LVEAVIMRDR TTGRARGFGF IVFADPSVAE RVIMDKHIID GRTVEAKKAV PRDDQQVLKR
101: HASPMHLISP SHGGNGGGAR TKKIFVGGLP SSITEAEFKN YFDQFGTIAD VVVMYDHNTQ RPRGFGFITF DSEESVDMVL HKTFHELNGK MVEVKRAVPK
201: ELSSTTPNRS PLIGYGNNYG VVPNRSSANS YFNSFPPGYN NNNLGSAGRF SPIGSGRNAF SSFGLGLNQE LNLNSNFDGN TLGYSRIPGN QYFNSASPNR
301: YNSPIGYNRG DSAYNPSNRD LWGNRSDSSG PGWNLGVSVG NNRGNWGLSS VVSDNNGYGR SYGAGSGLSG LSFAGNTNGF DGSIGELYRG SSVYSDSTWQ
401: QSMPHHQSSN ELDGLSRSYG FGIDNVGSDP SANASEGYSG NYNVGNRQTH RGIEA

Arabidopsis Description

AT4g26650/T15N24_100 [Source:UniProtKB/TrEMBL;Acc:Q8W569]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.