Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g049920.2.1 | Tomato | nucleus | 50.54 | 58.51 |
| VIT_13s0019g03610.t01 | Wine grape | nucleus | 49.82 | 56.28 |
| PGSC0003DMT400027411 | Potato | nucleus | 49.46 | 54.33 |
| TraesCS4B01G197500.2 | Wheat | cytosol, mitochondrion, nucleus | 54.12 | 50.5 |
| TraesCS4A01G106800.2 | Wheat | cytosol, mitochondrion, nucleus | 53.76 | 49.83 |
| Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 52.69 | 49.49 |
| EER95048 | Sorghum | cytosol, nucleus, plastid | 54.12 | 48.71 |
| Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 48.39 | 48.39 |
| HORVU4Hr1G057110.23 | Barley | nucleus | 53.76 | 48.39 |
| Os03t0286500-01 | Rice | cytosol, nucleus, plastid | 53.05 | 47.74 |
| TraesCS4D01G198000.3 | Wheat | cytosol | 53.76 | 47.02 |
| GSMUA_Achr4P09830_001 | Banana | mitochondrion | 24.73 | 45.7 |
| GSMUA_Achr11P... | Banana | nucleus | 42.65 | 44.91 |
| CDY02889 | Canola | nucleus | 33.69 | 43.32 |
| KRH06306 | Soybean | nucleus | 41.58 | 43.12 |
| KRH47731 | Soybean | nucleus | 41.22 | 43.07 |
| CDX73451 | Canola | cytosol | 37.99 | 42.4 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 25.81 | 40.68 |
| CDX78261 | Canola | nucleus | 37.63 | 40.54 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 22.94 | 40.25 |
| Bra007096.1-P | Field mustard | nucleus | 37.28 | 40.15 |
| AT3G54770.1 | Thale cress | nucleus | 37.28 | 39.85 |
| CDY64698 | Canola | nucleus | 36.92 | 39.46 |
| GSMUA_Achr5P17700_001 | Banana | cytosol | 12.19 | 36.56 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 32.26 | 34.35 |
| GSMUA_Achr10P... | Banana | nucleus | 32.26 | 33.21 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 30.82 | 33.2 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 31.9 | 32.96 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 30.11 | 31.82 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 26.88 | 31.78 |
| GSMUA_Achr8P24330_001 | Banana | nucleus, plastid | 32.62 | 31.38 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 25.81 | 29.88 |
| GSMUA_Achr7P00730_001 | Banana | cytosol | 13.26 | 20.44 |
| GSMUA_Achr10P... | Banana | nucleus | 15.77 | 19.05 |
| GSMUA_Achr4P32300_001 | Banana | nucleus | 9.68 | 18.37 |
| GSMUA_Achr10P... | Banana | nucleus | 15.41 | 17.34 |
| GSMUA_Achr9P12880_001 | Banana | cytosol | 13.62 | 16.52 |
| GSMUA_Achr7P13480_001 | Banana | nucleus | 19.0 | 15.73 |
| GSMUA_Achr10P... | Banana | nucleus | 18.28 | 15.32 |
| GSMUA_AchrUn_... | Banana | cytosol | 17.92 | 15.2 |
| GSMUA_Achr1P19260_001 | Banana | nucleus | 18.28 | 15.09 |
| GSMUA_Achr1P09440_001 | Banana | cytosol | 17.56 | 14.45 |
| GSMUA_Achr9P12410_001 | Banana | nucleus | 17.2 | 14.33 |
| GSMUA_Achr5P09550_001 | Banana | nucleus | 19.0 | 14.25 |
| GSMUA_Achr1P10970_001 | Banana | nucleus | 21.15 | 13.53 |
| GSMUA_Achr5P09540_001 | Banana | nucleus | 18.64 | 13.4 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 30.47 | 12.74 |
| GSMUA_Achr8P25380_001 | Banana | nucleus | 16.85 | 12.4 |
| GSMUA_Achr10P... | Banana | nucleus | 18.64 | 11.82 |
| GSMUA_Achr10P... | Banana | nucleus | 18.64 | 11.3 |
| GSMUA_AchrUn_... | Banana | nucleus | 16.85 | 10.96 |
| GSMUA_Achr6P15950_001 | Banana | nucleus | 18.28 | 10.94 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 16.85 | 10.63 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 19.0 | 10.6 |
| GSMUA_Achr2P14710_001 | Banana | cytosol | 13.62 | 10.59 |
| GSMUA_Achr4P09210_001 | Banana | nucleus | 16.49 | 10.41 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 16.13 | 10.37 |
| GSMUA_Achr4P28100_001 | Banana | nucleus | 13.26 | 8.37 |
| GSMUA_Achr4P24260_001 | Banana | cytosol | 9.68 | 8.21 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 19.35 | 7.95 |
| GSMUA_Achr5P17690_001 | Banana | nucleus | 9.32 | 6.44 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P13820_001 | EnsemblPlants:GSMUA_Achr3T13820_001 | EnsemblPlantsGene:GSMUA_Achr3G13820_001 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR44374 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0002961813 | UniProt:M0SEE9 | MapMan:35.1 | : | : |
Description
RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G13820_001]
Coordinates
chr3:+:12510924..12515035
Molecular Weight (calculated)
29912.7 Da
IEP (calculated)
8.023
GRAVY (calculated)
-0.276
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQPFGDTTL TKVFIGGLAW ETQKEALREH FDKYGDILEA VIISDKTTGR SKGYGFVTFK EPEAARKACE DAAPMINGRR ANCNLASLGA KRGSLRPSPP
101: TTPTPLPAHG YHPPPADEGM AVESRGVSTV PPAAPWSYPH TSGTPTPLSP FQLHHWHGVL PFYDAAAYGY PPNYVTDLGY NAKLGIIGGG RYFQGQFPYP
201: AQGGMVVPNG MMPIYPLYHL QYHQGMGVHY SHCFPTTNAA TGAAMTTIPT IAKPTTVPPP ITAVCVGMER VSGGSHMVE
101: TTPTPLPAHG YHPPPADEGM AVESRGVSTV PPAAPWSYPH TSGTPTPLSP FQLHHWHGVL PFYDAAAYGY PPNYVTDLGY NAKLGIIGGG RYFQGQFPYP
201: AQGGMVVPNG MMPIYPLYHL QYHQGMGVHY SHCFPTTNAA TGAAMTTIPT IAKPTTVPPP ITAVCVGMER VSGGSHMVE
001: MTTSNNVNGC FGDTKLTKVF VGGLAWDTHK EAMYDHFIKY GDILEAVIIS DKLTRRSKGY GFVTFKDAKA ATRACEDSTP IINGRRANCN LASLGGRLRK
101: SPTMTSPQQG PKNGNRATPP HVGNHSQWYY PSGFTNQQHQ QQNHQAVPFY GYPSAYVAPN MTFNQKVGYV GGTYMNGYYA QMQPQPQSQP QPQYYHHHMY
201: GGGRVMVGAA SPMVPFYTVY PYHQSQAIGF PQPSFSKPLS FSTPPISGIC HSISKPYNGS
101: SPTMTSPQQG PKNGNRATPP HVGNHSQWYY PSGFTNQQHQ QQNHQAVPFY GYPSAYVAPN MTFNQKVGYV GGTYMNGYYA QMQPQPQSQP QPQYYHHHMY
201: GGGRVMVGAA SPMVPFYTVY PYHQSQAIGF PQPSFSKPLS FSTPPISGIC HSISKPYNGS
Arabidopsis Description
ARP1Probable RNA-binding protein ARP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.