Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 83.87 | 78.79 |
| EER95048 | Sorghum | cytosol, nucleus, plastid | 87.1 | 78.39 |
| TraesCS4A01G106800.2 | Wheat | cytosol, mitochondrion, nucleus | 78.14 | 72.43 |
| TraesCS4B01G197500.2 | Wheat | cytosol, mitochondrion, nucleus | 77.42 | 72.24 |
| Os03t0286500-01 | Rice | cytosol, nucleus, plastid | 79.93 | 71.94 |
| HORVU4Hr1G057110.23 | Barley | nucleus | 78.49 | 70.65 |
| TraesCS4D01G198000.3 | Wheat | cytosol | 78.85 | 68.97 |
| VIT_13s0019g03610.t01 | Wine grape | nucleus | 48.39 | 54.66 |
| Solyc04g049920.2.1 | Tomato | nucleus | 46.59 | 53.94 |
| PGSC0003DMT400027411 | Potato | nucleus | 48.03 | 52.76 |
| GSMUA_Achr3P13820_001 | Banana | cytosol | 48.39 | 48.39 |
| GSMUA_Achr11P... | Banana | nucleus | 43.73 | 46.04 |
| KRH47731 | Soybean | nucleus | 40.5 | 42.32 |
| Zm00001d052212_P001 | Maize | nucleus | 24.37 | 42.24 |
| KRH06306 | Soybean | nucleus | 40.14 | 41.64 |
| CDY02889 | Canola | nucleus | 32.26 | 41.47 |
| CDX73451 | Canola | cytosol | 36.2 | 40.4 |
| AT3G54770.1 | Thale cress | nucleus | 37.28 | 39.85 |
| CDX78261 | Canola | nucleus | 36.56 | 39.38 |
| Bra007096.1-P | Field mustard | nucleus | 36.2 | 39.0 |
| CDY64698 | Canola | nucleus | 35.48 | 37.93 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 31.9 | 31.9 |
| Zm00001d042641_P001 | Maize | nucleus | 33.69 | 31.86 |
| Zm00001d042042_P001 | Maize | nucleus | 33.69 | 27.65 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 32.97 | 27.06 |
| Zm00001d037209_P001 | Maize | plastid | 31.18 | 26.2 |
| Zm00001d018103_P002 | Maize | plasma membrane | 29.39 | 25.79 |
| Zm00001d046716_P001 | Maize | nucleus | 32.97 | 25.56 |
| Zm00001d017829_P002 | Maize | plastid | 29.39 | 23.77 |
| Zm00001d051627_P002 | Maize | plastid | 30.47 | 23.1 |
| Zm00001d016349_P002 | Maize | nucleus | 18.64 | 13.54 |
| Zm00001d030579_P001 | Maize | mitochondrion | 16.49 | 13.22 |
| Zm00001d011336_P002 | Maize | nucleus | 21.15 | 13.17 |
| Zm00001d034200_P001 | Maize | nucleus | 7.89 | 12.87 |
| Zm00001d044469_P003 | Maize | nucleus | 20.43 | 12.75 |
| Zm00001d046190_P001 | Maize | extracellular | 19.0 | 12.68 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 18.64 | 12.59 |
| Zm00001d019079_P001 | Maize | cytosol | 18.64 | 11.61 |
| Zm00001d034201_P001 | Maize | nucleus | 10.39 | 11.55 |
| Zm00001d019084_P002 | Maize | nucleus | 18.64 | 11.45 |
| Zm00001d007772_P001 | Maize | nucleus | 18.28 | 11.36 |
| Zm00001d011885_P008 | Maize | cytosol | 13.98 | 10.83 |
| Zm00001d007839_P001 | Maize | cytosol | 14.34 | 10.81 |
| Zm00001d052820_P001 | Maize | extracellular, mitochondrion, plasma membrane | 14.7 | 10.71 |
| Zm00001d032739_P001 | Maize | nucleus | 16.49 | 10.38 |
| Zm00001d006704_P002 | Maize | nucleus | 17.92 | 10.33 |
| Zm00001d014058_P002 | Maize | plastid | 17.2 | 9.96 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 16.13 | 9.91 |
| Zm00001d053572_P002 | Maize | cytosol | 19.35 | 9.84 |
| Zm00001d018730_P001 | Maize | nucleus | 12.9 | 9.63 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 18.64 | 9.61 |
| Zm00001d002141_P006 | Maize | nucleus | 17.2 | 9.21 |
| Zm00001d019086_P001 | Maize | nucleus | 17.56 | 9.21 |
| Zm00001d026397_P001 | Maize | nucleus, plasma membrane | 16.49 | 8.83 |
| Zm00001d042133_P003 | Maize | cytosol | 9.68 | 6.78 |
Protein Annotations
| EntrezGene:100216697 | Gene3D:3.30.70.330 | MapMan:35.1 | ProteinID:AQL07463.1 | UniProt:B4FJA7 | EMBL:BT037195 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44374 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00017B69AF | EnsemblPlantsGene:Zm00001d047753 | EnsemblPlants:Zm00001d047753_P001 | EnsemblPlants:Zm00001d047753_T001 |
| SEG:seg | : | : | : | : | : |
Description
Probable RNA-binding protein ARP1
Coordinates
chr9:+:140907239..140909664
Molecular Weight (calculated)
29575.1 Da
IEP (calculated)
9.576
GRAVY (calculated)
-0.224
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MTMMAPHPQP LPLAQPPAFG DTTLTKVFVG GLAWETHEGA LRGHFQRYGD ILEAVIISDK LTGRSKGYGF VTFKEADAAK KACEDATPVI NGRRANCNLA
101: SLGAKPRPQP LQHVLRPSPP HAHALPSPHQ PTPAIAVGSR SVSPVPWYYH PSTTRPPPPP AAHQQYHGVL PFYPAAATYG YSPNYVTDLS YNTKVGQAAA
201: AGTAAGSYLQ LQGHLAYQAA PAQGGMVPVY PFYHYPYHAS HSQGLGVPAA HFLPPVSAAA VVSSKPTVVA TPKAVEWSG
101: SLGAKPRPQP LQHVLRPSPP HAHALPSPHQ PTPAIAVGSR SVSPVPWYYH PSTTRPPPPP AAHQQYHGVL PFYPAAATYG YSPNYVTDLS YNTKVGQAAA
201: AGTAAGSYLQ LQGHLAYQAA PAQGGMVPVY PFYHYPYHAS HSQGLGVPAA HFLPPVSAAA VVSSKPTVVA TPKAVEWSG
001: MTTSNNVNGC FGDTKLTKVF VGGLAWDTHK EAMYDHFIKY GDILEAVIIS DKLTRRSKGY GFVTFKDAKA ATRACEDSTP IINGRRANCN LASLGGRLRK
101: SPTMTSPQQG PKNGNRATPP HVGNHSQWYY PSGFTNQQHQ QQNHQAVPFY GYPSAYVAPN MTFNQKVGYV GGTYMNGYYA QMQPQPQSQP QPQYYHHHMY
201: GGGRVMVGAA SPMVPFYTVY PYHQSQAIGF PQPSFSKPLS FSTPPISGTV GGESIQKKAI H
101: SPTMTSPQQG PKNGNRATPP HVGNHSQWYY PSGFTNQQHQ QQNHQAVPFY GYPSAYVAPN MTFNQKVGYV GGTYMNGYYA QMQPQPQSQP QPQYYHHHMY
201: GGGRVMVGAA SPMVPFYTVY PYHQSQAIGF PQPSFSKPLS FSTPPISGTV GGESIQKKAI H
Arabidopsis Description
ARP1Probable RNA-binding protein ARP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.