Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27341663
|
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG30724 | Sorghum | plastid | 88.99 | 91.29 |
| Zm00001d052212_P001 | Maize | nucleus | 44.03 | 86.96 |
| HORVU6Hr1G078060.1 | Barley | plastid | 61.32 | 61.71 |
| TraesCS6D01G297300.1 | Wheat | plastid | 60.38 | 61.54 |
| Os02t0755400-01 | Rice | plastid | 33.96 | 61.36 |
| TraesCS6B01G348100.1 | Wheat | plastid | 58.8 | 60.13 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 30.5 | 54.8 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 26.73 | 53.46 |
| Zm00001d037209_P001 | Maize | plastid | 47.48 | 45.48 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 33.65 | 45.34 |
| AT5G53720.1 | Thale cress | cytosol | 13.84 | 44.0 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 36.16 | 43.56 |
| TraesCS6A01G318100.1 | Wheat | nucleus | 61.01 | 39.84 |
| CDY51790 | Canola | cytosol | 12.89 | 38.32 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 13.21 | 37.5 |
| KRH53608 | Soybean | nucleus | 27.99 | 36.18 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 27.36 | 36.1 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 30.5 | 34.77 |
| PGSC0003DMT400025900 | Potato | nucleus | 30.5 | 33.8 |
| KRH64318 | Soybean | nucleus | 26.73 | 33.07 |
| AT5G53680.1 | Thale cress | cytosol | 17.3 | 32.54 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 17.3 | 31.43 |
| Zm00001d042641_P001 | Maize | nucleus | 28.93 | 31.19 |
| Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 25.79 | 29.39 |
| Zm00001d046716_P001 | Maize | nucleus | 31.45 | 27.78 |
| Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 25.79 | 27.61 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 28.62 | 26.76 |
| Zm00001d042042_P001 | Maize | nucleus | 27.67 | 25.88 |
| Zm00001d017829_P002 | Maize | plastid | 26.42 | 24.35 |
| Zm00001d051627_P002 | Maize | plastid | 27.99 | 24.18 |
| Bra029612.1-P | Field mustard | nucleus | 16.04 | 17.77 |
| AT3G06970.1 | Thale cress | nucleus | 15.72 | 15.77 |
| CDY05301 | Canola | nucleus | 16.98 | 15.38 |
| CDY24657 | Canola | nucleus | 16.35 | 15.29 |
| CDY08023 | Canola | nucleus | 16.98 | 15.0 |
| Zm00001d034200_P001 | Maize | nucleus | 7.86 | 14.62 |
| Bra001228.1-P | Field mustard | cytosol | 16.04 | 14.09 |
| Zm00001d030579_P001 | Maize | mitochondrion | 15.41 | 14.08 |
| CDX74070 | Canola | cytosol | 15.72 | 13.89 |
| Zm00001d044469_P003 | Maize | nucleus | 19.5 | 13.87 |
| Zm00001d007839_P001 | Maize | cytosol | 15.72 | 13.51 |
| Zm00001d011336_P002 | Maize | nucleus | 18.55 | 13.17 |
| Zm00001d034201_P001 | Maize | nucleus | 10.38 | 13.15 |
| Zm00001d016349_P002 | Maize | nucleus | 15.41 | 12.76 |
| Zm00001d052820_P001 | Maize | extracellular, mitochondrion, plasma membrane | 14.78 | 12.27 |
| Zm00001d046190_P001 | Maize | extracellular | 16.04 | 12.2 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 15.41 | 11.86 |
| Zm00001d019079_P001 | Maize | cytosol | 16.67 | 11.83 |
| Zm00001d007772_P001 | Maize | nucleus | 16.67 | 11.8 |
| Zm00001d018730_P001 | Maize | nucleus | 13.84 | 11.76 |
| Zm00001d019084_P002 | Maize | nucleus | 16.67 | 11.67 |
| Zm00001d011885_P008 | Maize | cytosol | 13.21 | 11.67 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 16.35 | 11.45 |
| Zm00001d032739_P001 | Maize | nucleus | 15.41 | 11.06 |
| Zm00001d006704_P002 | Maize | nucleus | 16.67 | 10.95 |
| Zm00001d026397_P001 | Maize | nucleus, plasma membrane | 17.3 | 10.56 |
| Zm00001d014058_P002 | Maize | plastid | 15.72 | 10.37 |
| Zm00001d002141_P006 | Maize | nucleus | 16.98 | 10.36 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 17.3 | 10.17 |
| Zm00001d019086_P001 | Maize | nucleus | 16.04 | 9.59 |
| Zm00001d053572_P002 | Maize | cytosol | 15.41 | 8.93 |
| Zm00001d042133_P003 | Maize | cytosol | 9.43 | 7.54 |
Protein Annotations
| EntrezGene:100279918 | Gene3D:3.30.70.330 | MapMan:35.1 | UniProt:A0A1D6HKR9 | ProteinID:AQK75022.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44828 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0002210F36 | EnsemblPlantsGene:Zm00001d018103 | EnsemblPlants:Zm00001d018103_P002 | EnsemblPlants:Zm00001d018103_T002 | SEG:seg |
Description
Probable RNA-binding protein ARP1
Coordinates
chr5:+:214348208..214354420
Molecular Weight (calculated)
33724.9 Da
IEP (calculated)
8.375
GRAVY (calculated)
-0.723
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSSSFSGP GGSPAHASPG GGGGGGGGGG VGSYHHHRSR FGDTTLTKVF VGGLAWETPS EGLRQHFDVY GEILEAVVIT DRETGRSKGY GFVIFRDPDA
101: AARAVQNPNP VIAGRRANCN IAAFGPPRAA QPRGRGGGGG GRGPHVPDQP PQGSPSPYRV PSQMTPPHQA ATLFYNPQFG YWYPPDYPYQ QALYNSQVLQ
201: HYYPQMYGPA SPSGPAYQYM GYMPGGPSPR TGFSPMQQPM RQPFFQQPTT QMDGSFPSVP SLPPNFRLQL PPRAVSRESD DASGSQSAQP VSSTPATATN
301: NEEDSRPVVS DSDPNTPN
101: AARAVQNPNP VIAGRRANCN IAAFGPPRAA QPRGRGGGGG GRGPHVPDQP PQGSPSPYRV PSQMTPPHQA ATLFYNPQFG YWYPPDYPYQ QALYNSQVLQ
201: HYYPQMYGPA SPSGPAYQYM GYMPGGPSPR TGFSPMQQPM RQPFFQQPTT QMDGSFPSVP SLPPNFRLQL PPRAVSRESD DASGSQSAQP VSSTPATATN
301: NEEDSRPVVS DSDPNTPN
001: MSNTSYYRSP FGDTTHTKVF VGGLAWETPT DEMRRYFDQF GEILEAVIIT DKATGKSKGY GFVTFRDSDS ATRAVADPNP VIDGRKANCN IASFGRPRPS
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LME7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.