Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0755400-01 | Rice | plastid | 58.39 | 53.41 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 53.42 | 48.59 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 47.83 | 48.43 |
| Zm00001d018103_P002 | Maize | plasma membrane | 86.96 | 44.03 |
| AT5G53720.1 | Thale cress | cytosol | 26.71 | 43.0 |
| CDY51790 | Canola | cytosol | 24.84 | 37.38 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 25.47 | 36.61 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 48.45 | 33.05 |
| HORVU6Hr1G078060.1 | Barley | plastid | 63.98 | 32.59 |
| TraesCS6D01G297300.1 | Wheat | plastid | 62.73 | 32.37 |
| TraesCS6B01G348100.1 | Wheat | plastid | 62.11 | 32.15 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 51.55 | 31.44 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 32.92 | 30.29 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 44.72 | 29.88 |
| Zm00001d037209_P001 | Maize | plastid | 59.63 | 28.92 |
| KRH53608 | Soybean | nucleus | 42.86 | 28.05 |
| AT5G53680.1 | Thale cress | cytosol | 28.57 | 27.22 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 44.1 | 25.45 |
| KRH64318 | Soybean | nucleus | 40.37 | 25.29 |
| PGSC0003DMT400025900 | Potato | nucleus | 43.48 | 24.39 |
| Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 42.24 | 24.37 |
| Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 43.48 | 23.57 |
| Zm00001d042641_P001 | Maize | nucleus | 42.86 | 23.39 |
| Zm00001d042042_P001 | Maize | nucleus | 45.96 | 21.76 |
| TraesCS6A01G318100.1 | Wheat | nucleus | 63.35 | 20.94 |
| Zm00001d046716_P001 | Maize | nucleus | 45.96 | 20.56 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 42.24 | 20.0 |
| Zm00001d051627_P002 | Maize | plastid | 44.1 | 19.29 |
| Zm00001d017829_P002 | Maize | plastid | 40.99 | 19.13 |
| Bra029612.1-P | Field mustard | nucleus | 27.95 | 15.68 |
| AT3G06970.1 | Thale cress | nucleus | 28.57 | 14.51 |
| CDY24657 | Canola | nucleus | 28.57 | 13.53 |
| Zm00001d034200_P001 | Maize | nucleus | 14.29 | 13.45 |
| CDY05301 | Canola | nucleus | 29.19 | 13.39 |
| CDY08023 | Canola | nucleus | 27.95 | 12.5 |
| Zm00001d044469_P003 | Maize | nucleus | 34.16 | 12.3 |
| CDX74070 | Canola | cytosol | 26.71 | 11.94 |
| Bra001228.1-P | Field mustard | cytosol | 26.71 | 11.88 |
| Zm00001d011336_P002 | Maize | nucleus | 32.92 | 11.83 |
| Zm00001d034201_P001 | Maize | nucleus | 17.39 | 11.16 |
| Zm00001d016349_P002 | Maize | nucleus | 25.47 | 10.68 |
| Zm00001d030579_P001 | Maize | mitochondrion | 21.74 | 10.06 |
| Zm00001d007839_P001 | Maize | cytosol | 22.98 | 10.0 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 27.33 | 9.69 |
| Zm00001d046190_P001 | Maize | extracellular | 24.22 | 9.33 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 23.6 | 9.2 |
| Zm00001d019079_P001 | Maize | cytosol | 24.84 | 8.93 |
| Zm00001d007772_P001 | Maize | nucleus | 24.84 | 8.91 |
| Zm00001d052820_P001 | Maize | extracellular, mitochondrion, plasma membrane | 21.12 | 8.88 |
| Zm00001d018730_P001 | Maize | nucleus | 20.5 | 8.82 |
| Zm00001d006704_P002 | Maize | nucleus | 26.09 | 8.68 |
| Zm00001d026397_P001 | Maize | nucleus, plasma membrane | 27.95 | 8.64 |
| Zm00001d002141_P006 | Maize | nucleus | 27.95 | 8.64 |
| Zm00001d019084_P002 | Maize | nucleus | 24.22 | 8.59 |
| Zm00001d032739_P001 | Maize | nucleus | 23.6 | 8.58 |
| Zm00001d011885_P008 | Maize | cytosol | 18.63 | 8.33 |
| Zm00001d014058_P002 | Maize | plastid | 24.22 | 8.09 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 25.47 | 7.58 |
| Zm00001d019086_P001 | Maize | nucleus | 24.84 | 7.52 |
| Zm00001d053572_P002 | Maize | cytosol | 24.84 | 7.29 |
| Zm00001d042133_P003 | Maize | cytosol | 12.42 | 5.03 |
Protein Annotations
| EnsemblPlants:Zm00001d052212_P001 | EnsemblPlants:Zm00001d052212_T001 | EnsemblPlantsGene:Zm00001d052212 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR44828 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:AQK56476.1 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00084401AF | UniProt:A0A1D6QEB7 | MapMan:35.1 | : |
Description
Probable RNA-binding protein ARP1
Coordinates
chr4:-:183376753..183379650
Molecular Weight (calculated)
16973.8 Da
IEP (calculated)
9.694
GRAVY (calculated)
-0.542
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSSSSSGP GGPYHHHRSR FGDTTLTKVF VGGLAWETPS EGLRHHFEAY GDILEAVVIT DRETGRSKGY GFVIFRDPGA AALAVQNPNP VIAGRRANCN
101: IAAFGPPRTA QPRGRGGGGG AVREPHGPDQ PPQGSPYSYR LPSQMTPPQA AAVFYSPQYG G
101: IAAFGPPRTA QPRGRGGGGG AVREPHGPDQ PPQGSPYSYR LPSQMTPPQA AAVFYSPQYG G
001: MSNTSYYRSP FGDTTHTKVF VGGLAWETPT DEMRRYFDQF GEILEAVIIT DKATGKSKGY GFVTFRDSDS ATRAVADPNP VIDGRKANCN IASFGRPRPS
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LME7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.