Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG34100 | Sorghum | cytosol | 97.5 | 97.5 |
| Os01t0945800-01 | Rice | nucleus | 90.56 | 89.81 |
| Zm00001d042133_P003 | Maize | cytosol | 81.67 | 73.87 |
| GSMUA_Achr2P14710_001 | Banana | cytosol | 73.33 | 73.54 |
| GSMUA_Achr4P24260_001 | Banana | cytosol | 66.94 | 73.25 |
| TraesCS3D01G480300.1 | Wheat | cytosol | 73.06 | 70.51 |
| VIT_07s0031g00600.t01 | Wine grape | cytosol | 70.0 | 70.19 |
| TraesCS3B01G532600.3 | Wheat | cytosol | 72.5 | 69.97 |
| TraesCS3A01G485000.1 | Wheat | cytosol | 71.94 | 69.44 |
| KRH77004 | Soybean | nucleus | 69.44 | 69.06 |
| HORVU3Hr1G105930.10 | Barley | cytoskeleton, cytosol, nucleus | 70.56 | 68.46 |
| KRH28467 | Soybean | cytosol | 69.17 | 68.22 |
| PGSC0003DMT400010280 | Potato | cytosol | 69.17 | 67.12 |
| Solyc02g090910.2.1 | Tomato | nucleus | 69.44 | 66.49 |
| CDY42724 | Canola | cytosol | 67.22 | 63.85 |
| AT4G36960.2 | Thale cress | cytosol | 66.94 | 63.59 |
| CDY69852 | Canola | cytosol | 67.22 | 63.35 |
| Bra017802.1-P | Field mustard | nucleus | 66.39 | 58.58 |
| CDX69279 | Canola | nucleus | 23.61 | 36.02 |
| Zm00001d034200_P001 | Maize | nucleus | 11.94 | 25.15 |
| Zm00001d016349_P002 | Maize | nucleus | 26.39 | 24.74 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 28.06 | 24.46 |
| Zm00001d030579_P001 | Maize | mitochondrion | 23.33 | 24.14 |
| Zm00001d046190_P001 | Maize | extracellular | 27.78 | 23.92 |
| Zm00001d034201_P001 | Maize | nucleus | 16.39 | 23.51 |
| Zm00001d007839_P001 | Maize | cytosol | 23.89 | 23.24 |
| Zm00001d019079_P001 | Maize | cytosol | 28.89 | 23.21 |
| Zm00001d007772_P001 | Maize | nucleus | 27.78 | 22.27 |
| Zm00001d052820_P001 | Maize | extracellular, mitochondrion, plasma membrane | 23.61 | 22.19 |
| Zm00001d018730_P001 | Maize | nucleus | 22.22 | 21.39 |
| Zm00001d019084_P002 | Maize | nucleus | 26.67 | 21.15 |
| Zm00001d032739_P001 | Maize | nucleus | 25.83 | 20.99 |
| Zm00001d006704_P002 | Maize | nucleus | 27.22 | 20.25 |
| Zm00001d014058_P002 | Maize | plastid | 26.39 | 19.71 |
| Zm00001d052212_P001 | Maize | nucleus | 8.33 | 18.63 |
| Zm00001d019086_P001 | Maize | nucleus | 27.22 | 18.42 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 27.22 | 18.11 |
| Zm00001d042641_P001 | Maize | nucleus | 13.89 | 16.95 |
| Zm00001d053572_P002 | Maize | cytosol | 25.83 | 16.94 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 12.5 | 16.13 |
| Zm00001d044469_P003 | Maize | nucleus | 19.17 | 15.44 |
| Zm00001d011336_P002 | Maize | nucleus | 18.89 | 15.18 |
| Zm00001d042042_P001 | Maize | nucleus | 14.17 | 15.0 |
| Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 11.67 | 14.14 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 13.33 | 14.12 |
| Zm00001d002141_P006 | Maize | nucleus | 20.28 | 14.01 |
| Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 10.83 | 13.98 |
| Zm00001d026397_P001 | Maize | nucleus, plasma membrane | 19.72 | 13.63 |
| Zm00001d037209_P001 | Maize | plastid | 12.22 | 13.25 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 16.67 | 13.22 |
| Zm00001d018103_P002 | Maize | plasma membrane | 11.67 | 13.21 |
| Zm00001d046716_P001 | Maize | nucleus | 12.5 | 12.5 |
| Zm00001d017829_P002 | Maize | plastid | 11.94 | 12.46 |
| Zm00001d051627_P002 | Maize | plastid | 11.39 | 11.14 |
Protein Annotations
| EntrezGene:100193201 | Gene3D:3.30.70.330 | MapMan:35.1 | ProteinID:AQK98244.1 | ProteinID:AQK98249.1 | ProteinID:AQK98253.1 |
| ProteinID:AQK98255.1 | ProteinID:AQK98260.1 | UniProt:B4FE67 | EMBL:BT035405 | EMBL:BT039651 | EMBL:BT068467 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR45519 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00017B67C6 | EnsemblPlantsGene:Zm00001d011885 | EnsemblPlants:Zm00001d011885_P008 | EnsemblPlants:Zm00001d011885_T008 |
| SEG:seg | : | : | : | : | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Coordinates
chr8:+:163934400..163941137
Molecular Weight (calculated)
39804.6 Da
IEP (calculated)
7.296
GRAVY (calculated)
-0.536
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MATKLVVLGI PWDVDTEGLR EYMAKFGPLD DCVVMKERSS GRSRGFGYVT FASADDAKNV LDCEHVLGSR TLEVKVATPK EEMKSQGSKK ATRIFVARIP
101: QSVDESMFRR HFEAFGEILD LYMPKEHGSK GHRGIGFITF QSAESVDNIM QESHELDGTT VVVDRATPKD EDVRYPPSRP SQGGYGAYNA YISAATRYAT
201: LGAPTLYDHP GSAYGRGYYG PSQAVGKKIF VGRLPQEANT DDLRQYFGRF GRIVDAYIPK DPKRSGHRGF GFVTFADDGV AERVARRSHE ILGHEVAIDT
301: AAPLENDSAA GGYIDPMDLY GAYGSMRSFG RFCGGLDYNY GYGPSSGSSR SRSDWRYRPY
101: QSVDESMFRR HFEAFGEILD LYMPKEHGSK GHRGIGFITF QSAESVDNIM QESHELDGTT VVVDRATPKD EDVRYPPSRP SQGGYGAYNA YISAATRYAT
201: LGAPTLYDHP GSAYGRGYYG PSQAVGKKIF VGRLPQEANT DDLRQYFGRF GRIVDAYIPK DPKRSGHRGF GFVTFADDGV AERVARRSHE ILGHEVAIDT
301: AAPLENDSAA GGYIDPMDLY GAYGSMRSFG RFCGGLDYNY GYGPSSGSSR SRSDWRYRPY
001: MERKLVVLGI PWDIDSDGLK DYMSKFGDLE DCIVMKDRST GRSRGFGYVT FASAEDAKNA LKGEHFLGNR ILEVKVATPK EEMRQPAKKV TRIFVARIPS
101: SVSESDFRSH FERYGEITDL YMPKDYNSKQ HRGIGFITFS SADSVEDLME DTHDLGGTTV AVDRATPKED DHPPRPPPVA RMSRPPVAIA GGFGAPGGYG
201: AYDAYISAAT RYAALGAPTL YDNPATFYGR GEPTTRGIGN KIFVGRLPQE ASVDDLRDYF GRFGHIQDAY IPKDPKRSGH RGFGFVTFAE NGVADRVARR
301: SHEICGQEVA IDSATPLDEA GPSAGASSML SSSRPEYFGG YGGPMRAFGR MYGGMSLDDW GYGMPNARPS RPDRRYRPY
101: SVSESDFRSH FERYGEITDL YMPKDYNSKQ HRGIGFITFS SADSVEDLME DTHDLGGTTV AVDRATPKED DHPPRPPPVA RMSRPPVAIA GGFGAPGGYG
201: AYDAYISAAT RYAALGAPTL YDNPATFYGR GEPTTRGIGN KIFVGRLPQE ASVDDLRDYF GRFGHIQDAY IPKDPKRSGH RGFGFVTFAE NGVADRVARR
301: SHEICGQEVA IDSATPLDEA GPSAGASSML SSSRPEYFGG YGGPMRAFGR MYGGMSLDDW GYGMPNARPS RPDRRYRPY
Arabidopsis Description
AT4g36960/C7A10_400 [Source:UniProtKB/TrEMBL;Acc:Q94AC3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.