Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27341663
|
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER88542 | Sorghum | nucleus | 93.22 | 93.0 |
| Zm00001d046190_P001 | Maize | extracellular | 91.04 | 89.95 |
| Os06t0566100-01 | Rice | cytosol, nucleus | 61.5 | 86.99 |
| TraesCS7A01G360900.1 | Wheat | nucleus | 76.27 | 78.55 |
| TraesCS7B01G266900.1 | Wheat | nucleus | 71.43 | 78.04 |
| HORVU7Hr1G087550.1 | Barley | nucleus | 74.09 | 76.69 |
| Zm00001d016349_P002 | Maize | nucleus | 65.38 | 70.31 |
| TraesCS7D01G362200.1 | Wheat | nucleus | 75.06 | 69.82 |
| GSMUA_Achr7P13480_001 | Banana | nucleus | 53.03 | 64.99 |
| GSMUA_Achr10P... | Banana | nucleus | 52.06 | 64.56 |
| Solyc03g121710.2.1 | Tomato | nucleus | 35.35 | 54.28 |
| VIT_09s0002g02350.t01 | Wine grape | cytosol | 44.31 | 51.84 |
| Zm00001d053572_P002 | Maize | cytosol | 65.86 | 49.54 |
| PGSC0003DMT400006638 | Potato | nucleus | 45.52 | 48.7 |
| Zm00001d030579_P001 | Maize | mitochondrion | 40.44 | 47.99 |
| CDY26229 | Canola | nucleus | 42.13 | 46.9 |
| CDY48318 | Canola | nucleus | 42.13 | 46.77 |
| AT1G17640.1 | Thale cress | nucleus | 41.65 | 46.61 |
| KRH23293 | Soybean | nucleus | 38.98 | 45.61 |
| Zm00001d052820_P001 | Maize | extracellular, mitochondrion, plasma membrane | 39.47 | 42.56 |
| Solyc06g062740.1.1 | Tomato | cytosol | 19.61 | 41.12 |
| PGSC0003DMT400012372 | Potato | nucleus | 28.33 | 39.39 |
| PGSC0003DMT400012369 | Potato | nucleus | 35.84 | 33.87 |
| Solyc06g062730.1.1 | Tomato | nucleus | 30.02 | 33.79 |
| Zm00001d034200_P001 | Maize | nucleus | 12.83 | 30.99 |
| Zm00001d032739_P001 | Maize | nucleus | 32.45 | 30.25 |
| Zm00001d034201_P001 | Maize | nucleus | 17.92 | 29.48 |
| Zm00001d011885_P008 | Maize | cytosol | 24.46 | 28.06 |
| Zm00001d014058_P002 | Maize | plastid | 32.69 | 28.01 |
| Zm00001d007839_P001 | Maize | cytosol | 23.49 | 26.22 |
| Zm00001d019079_P001 | Maize | cytosol | 28.09 | 25.89 |
| Zm00001d007772_P001 | Maize | nucleus | 27.36 | 25.17 |
| Zm00001d019084_P002 | Maize | nucleus | 27.12 | 24.67 |
| Zm00001d018730_P001 | Maize | nucleus | 21.79 | 24.06 |
| Zm00001d052212_P001 | Maize | nucleus | 9.2 | 23.6 |
| Zm00001d006704_P002 | Maize | nucleus | 26.88 | 22.93 |
| Zm00001d019086_P001 | Maize | nucleus | 28.09 | 21.8 |
| Zm00001d042641_P001 | Maize | nucleus | 15.25 | 21.36 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 14.29 | 21.15 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 27.12 | 20.7 |
| Zm00001d042133_P003 | Maize | cytosol | 19.37 | 20.1 |
| Zm00001d044469_P003 | Maize | nucleus | 20.82 | 19.24 |
| Zm00001d011336_P002 | Maize | nucleus | 20.34 | 18.75 |
| Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 12.59 | 18.64 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 20.34 | 18.5 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 15.01 | 18.24 |
| Zm00001d042042_P001 | Maize | nucleus | 14.53 | 17.65 |
| Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 11.86 | 16.5 |
| Zm00001d046716_P001 | Maize | nucleus | 14.04 | 16.11 |
| Zm00001d018103_P002 | Maize | plasma membrane | 11.86 | 15.41 |
| Zm00001d037209_P001 | Maize | plastid | 12.35 | 15.36 |
| Zm00001d017829_P002 | Maize | plastid | 12.59 | 15.07 |
| Zm00001d051627_P002 | Maize | plastid | 12.35 | 13.86 |
| Zm00001d002141_P006 | Maize | nucleus | 15.98 | 12.67 |
| Zm00001d026397_P001 | Maize | nucleus, plasma membrane | 15.5 | 12.28 |
Protein Annotations
| EntrezGene:100279268 | Gene3D:3.30.70.330 | MapMan:35.1 | ProteinID:AQK82483.1 | UniProt:B7ZX91 | EMBL:BT053933 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 |
| InterPro:Hrp1_RRM2 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0001917110 | EnsemblPlantsGene:Zm00001d036966 |
| EnsemblPlants:Zm00001d036966_P001 | EnsemblPlants:Zm00001d036966_T001 | SEG:seg | : | : | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Coordinates
chr6:-:107628483..107635122
Molecular Weight (calculated)
43095.7 Da
IEP (calculated)
4.532
GRAVY (calculated)
-0.799
Length
413 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGYGEENQN TMSGYEEEEE EEVEEVEEVY EEEEEEEEEE EEEDGEGEAD EGAVASEPAA MAAETRSVVG GRGLAKAVGN VDTGGEDGRD ADSSGGDASG
101: KIFVGGVAWE TTEETFTKHF QKYGAITDSV IMKDKHTRMP RGFGFVTFSD PSVLDRVLED EHVIDGRTVE VKRTVPKEEM SSKDGPKTKK IFVGGIPPSL
201: TEDKLKEHFS SYGKVVEHQI MLDHSTGRSR GFGFVTFESE DAVERVMSEG RMHDLGGKQV EIKKAEPKKP GVGDSSSNGR HSRGGGHRDS YRGSGGNGFS
301: GNSSGGGYGY SGGYRSTAAA HYGSTAYGAY GRGYGYGGTA GYGLGYGSAY GGSMYGGPYG AYAAYGGAYG GGAYGAPGGY GAGGYGSYGG AGGMGGGGSA
401: GGRGSSRYHP YGK
101: KIFVGGVAWE TTEETFTKHF QKYGAITDSV IMKDKHTRMP RGFGFVTFSD PSVLDRVLED EHVIDGRTVE VKRTVPKEEM SSKDGPKTKK IFVGGIPPSL
201: TEDKLKEHFS SYGKVVEHQI MLDHSTGRSR GFGFVTFESE DAVERVMSEG RMHDLGGKQV EIKKAEPKKP GVGDSSSNGR HSRGGGHRDS YRGSGGNGFS
301: GNSSGGGYGY SGGYRSTAAA HYGSTAYGAY GRGYGYGGTA GYGLGYGSAY GGSMYGGPYG AYAAYGGAYG GGAYGAPGGY GAGGYGSYGG AGGMGGGGSA
401: GGRGSSRYHP YGK
001: MGSRSRNDNF QSGDGASPGK IFIGGLHKDT TNTVFNKHFG KYGEITDSVI MRDRHTGQPR GFGFITFADP SVVDKVIEDT HVINGKQVEI KRTIPKGAGG
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LHL2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.