Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os06t0566100-01 | Rice | cytosol, nucleus | 43.91 | 53.08 |
| Solyc03g121710.2.1 | Tomato | nucleus | 37.96 | 49.81 |
| KRH23293 | Soybean | nucleus | 48.44 | 48.44 |
| GSMUA_Achr7P13480_001 | Banana | nucleus | 45.89 | 48.07 |
| GSMUA_Achr10P... | Banana | nucleus | 44.48 | 47.15 |
| Os02t0221500-01 | Rice | nucleus | 52.97 | 47.1 |
| EES06526 | Sorghum | nucleus | 52.12 | 47.06 |
| PGSC0003DMT400006638 | Potato | nucleus | 50.42 | 46.11 |
| Zm00001d016349_P002 | Maize | nucleus | 50.14 | 46.09 |
| TraesCS7B01G266900.1 | Wheat | nucleus | 47.88 | 44.71 |
| EER88542 | Sorghum | nucleus | 52.41 | 44.69 |
| TraesCS7A01G360900.1 | Wheat | nucleus | 50.42 | 44.39 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 51.84 | 44.31 |
| TraesCS6D01G173900.1 | Wheat | nucleus | 51.27 | 44.25 |
| AT1G17640.1 | Thale cress | nucleus | 46.18 | 44.17 |
| TraesCS6A01G187000.1 | Wheat | nucleus | 51.56 | 44.07 |
| TraesCS6B01G217500.1 | Wheat | nucleus | 51.56 | 43.96 |
| CDY26229 | Canola | nucleus | 46.18 | 43.94 |
| HORVU7Hr1G087550.1 | Barley | nucleus | 49.58 | 43.86 |
| CDY48318 | Canola | nucleus | 45.89 | 43.55 |
| VIT_12s0057g01280.t01 | Wine grape | nucleus | 31.73 | 43.41 |
| Zm00001d046190_P001 | Maize | extracellular | 51.27 | 43.3 |
| Solyc06g062740.1.1 | Tomato | cytosol | 24.08 | 43.15 |
| PGSC0003DMT400012372 | Potato | nucleus | 34.56 | 41.08 |
| VIT_19s0015g00920.t01 | Wine grape | nucleus | 39.38 | 39.94 |
| HORVU6Hr1G040220.5 | Barley | plastid | 51.56 | 39.22 |
| TraesCS7D01G362200.1 | Wheat | nucleus | 48.73 | 38.74 |
| VIT_18s0117g00150.t01 | Wine grape | nucleus | 38.53 | 37.88 |
| VIT_14s0066g00480.t01 | Wine grape | nucleus | 40.23 | 37.77 |
| Solyc06g062730.1.1 | Tomato | nucleus | 35.98 | 34.6 |
| PGSC0003DMT400012369 | Potato | nucleus | 42.21 | 34.1 |
| Zm00001d053572_P002 | Maize | cytosol | 50.71 | 32.6 |
| VIT_07s0005g03980.t01 | Wine grape | nucleus | 36.26 | 29.49 |
| VIT_05s0049g01660.t01 | Wine grape | nucleus | 36.54 | 27.8 |
| VIT_07s0031g00600.t01 | Wine grape | cytosol | 28.05 | 27.58 |
| VIT_12s0057g00480.t01 | Wine grape | nucleus | 36.83 | 27.2 |
| VIT_19s0090g01660.t01 | Wine grape | nucleus | 35.69 | 26.36 |
| VIT_18s0089g00920.t01 | Wine grape | nucleus | 18.13 | 23.79 |
| VIT_18s0122g00660.t01 | Wine grape | nucleus, plastid | 17.0 | 21.05 |
| VIT_13s0019g03610.t01 | Wine grape | nucleus | 14.45 | 20.65 |
| VIT_15s0048g02630.t01 | Wine grape | nucleus | 15.58 | 20.6 |
| VIT_18s0001g08640.t01 | Wine grape | nucleus | 26.35 | 19.75 |
| VIT_19s0014g01570.t01 | Wine grape | nucleus | 23.23 | 18.26 |
| VIT_08s0007g06300.t01 | Wine grape | nucleus | 17.56 | 18.13 |
| VIT_18s0001g05840.t01 | Wine grape | nucleus | 14.16 | 18.12 |
| VIT_08s0056g00690.t01 | Wine grape | nucleus | 21.53 | 16.41 |
| VIT_07s0031g01290.t01 | Wine grape | nucleus | 16.15 | 14.54 |
| VIT_06s0009g01190.t01 | Wine grape | nucleus | 17.56 | 13.57 |
| VIT_06s0009g01180.t01 | Wine grape | mitochondrion, nucleus, plastid | 19.83 | 13.51 |
| VIT_16s0098g01050.t01 | Wine grape | endoplasmic reticulum, extracellular | 10.2 | 12.37 |
Protein Annotations
| EntrezGene:100266965 | Gene3D:3.30.70.330 | MapMan:35.1 | ProteinID:CBI35964 | ProteinID:CBI35964.3 | UniProt:D7U018 |
| EMBL:FN596494 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR45276 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0001BE464C | ArrayExpress:VIT_09s0002g02350 | EnsemblPlantsGene:VIT_09s0002g02350 |
| EnsemblPlants:VIT_09s0002g02350.t01 | RefSeq:XP_010654539.1 | RefSeq:XP_010654540.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr9:-:2149386..2153071
Molecular Weight (calculated)
37640.8 Da
IEP (calculated)
6.134
GRAVY (calculated)
-0.476
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDLPEFRLF ENDLDHNHRH SSGRGIEPIN SVDSEGIGIQ QLVDVRNSYS GKLFVGGISW ETSEEIFTNY FSNYGEITDS VIMMDRHTGR PRGFGFITFA
101: DPAVADKVLE EDHVIDGRAV EVKKTVPREG MEVRGVSKTR KIFVGGIPSS LTEDELKDYF SSYGAIVENQ IMLDHVTGRS RGFGFVTFVS EDAVERLFSE
201: GKTHELGGKL VEIKKAEPKR AGAEYNAGAA KFYGGRNGSQ GGHGGKMGGG DAGYGGYTSY GGYDSYGMGY GGVAAGFYGA YCNPDGYGRY MYGYGFGAPM
301: YGCTGYGTLN GYGGAIATGY GGGGGKGYGN GIGHGGGKGH LGGNTVTGRY HPY
101: DPAVADKVLE EDHVIDGRAV EVKKTVPREG MEVRGVSKTR KIFVGGIPSS LTEDELKDYF SSYGAIVENQ IMLDHVTGRS RGFGFVTFVS EDAVERLFSE
201: GKTHELGGKL VEIKKAEPKR AGAEYNAGAA KFYGGRNGSQ GGHGGKMGGG DAGYGGYTSY GGYDSYGMGY GGVAAGFYGA YCNPDGYGRY MYGYGFGAPM
301: YGCTGYGTLN GYGGAIATGY GGGGGKGYGN GIGHGGGKGH LGGNTVTGRY HPY
001: MDYNSDRGYD DSYHHHVHDE QLPQSDFEVE TFDDRRNGGA AVDTGGIQMK HSVDHRHSSS SMSSPGKLFV GGVSWETTAE TFANYFGKFG EVVDSVIMTD
101: RITGNPRGFG FVTFADSAVA EKVLEEDHVI DDRKVDLKRT LPRGDKDTDI KAVSKTRKIF VGGLPPLLEE DELKNYFCVY GDIIEHQIMY DHHTGRSRGF
201: GFVTFQTEDS VDRLFSDGKV HELGDKQVEI KRAEPKRTGR DNSFRSYGAS GKYDQEDSYS GKANEDYSMY SGYGGYGGYG AYAGNSMVNP AGFYGYGGGY
301: GYGYGYGGQM FNMGYGAGGY SHMGSGYGVA AAAAYGGGKS HGNGNNGSSS GKGNGTNGSG PDRYHPYQK
101: RITGNPRGFG FVTFADSAVA EKVLEEDHVI DDRKVDLKRT LPRGDKDTDI KAVSKTRKIF VGGLPPLLEE DELKNYFCVY GDIIEHQIMY DHHTGRSRGF
201: GFVTFQTEDS VDRLFSDGKV HELGDKQVEI KRAEPKRTGR DNSFRSYGAS GKYDQEDSYS GKANEDYSMY SGYGGYGGYG AYAGNSMVNP AGFYGYGGGY
301: GYGYGYGGQM FNMGYGAGGY SHMGSGYGVA AAAAYGGGKS HGNGNNGSSS GKGNGTNGSG PDRYHPYQK
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I906]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.