Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_19s0015g00920.t01 | Wine grape | nucleus | 84.4 | 87.07 |
| AT3G13224.2 | Thale cress | nucleus | 68.52 | 68.72 |
| CDY24201 | Canola | nucleus | 68.25 | 67.68 |
| Bra039380.1-P | Field mustard | nucleus | 67.69 | 67.13 |
| CDY43360 | Canola | nucleus | 67.69 | 67.13 |
| VIT_12s0057g01280.t01 | Wine grape | nucleus | 46.8 | 65.12 |
| GSMUA_AchrUn_... | Banana | cytosol | 58.77 | 64.13 |
| GSMUA_Achr1P09440_001 | Banana | cytosol | 60.45 | 64.01 |
| GSMUA_Achr1P19260_001 | Banana | nucleus | 59.89 | 63.61 |
| Os08t0320100-01 | Rice | nucleus | 61.0 | 62.57 |
| EES01076 | Sorghum | nucleus | 59.89 | 61.6 |
| Zm00001d030579_P001 | Maize | mitochondrion | 57.94 | 59.77 |
| VIT_14s0066g00480.t01 | Wine grape | nucleus | 62.4 | 59.57 |
| TraesCS7A01G282600.1 | Wheat | cytosol | 55.43 | 56.86 |
| TraesCS6D01G272500.1 | Wheat | nucleus | 54.87 | 56.77 |
| TraesCS7B01G178300.1 | Wheat | nucleus | 56.27 | 56.74 |
| HORVU7Hr1G060930.1 | Barley | plasma membrane | 55.71 | 56.5 |
| TraesCS7D01G281300.1 | Wheat | nucleus | 55.71 | 56.34 |
| TraesCS6A01G291100.1 | Wheat | nucleus | 53.48 | 56.3 |
| GSMUA_Achr8P25380_001 | Banana | nucleus | 59.05 | 55.94 |
| Zm00001d052820_P001 | Maize | extracellular, mitochondrion, plasma membrane | 57.1 | 53.52 |
| GSMUA_Achr9P12880_001 | Banana | cytosol | 34.26 | 53.48 |
| TraesCS6B01G321300.2 | Wheat | nucleus | 55.15 | 53.08 |
| OQU81002 | Sorghum | nucleus | 43.45 | 46.57 |
| VIT_09s0002g02350.t01 | Wine grape | cytosol | 37.88 | 38.53 |
| Os08t0492100-02 | Rice | nucleus | 39.55 | 32.57 |
| VIT_12s0057g00480.t01 | Wine grape | nucleus | 40.67 | 30.54 |
| VIT_07s0005g03980.t01 | Wine grape | nucleus | 35.65 | 29.49 |
| VIT_05s0049g01660.t01 | Wine grape | nucleus | 36.77 | 28.45 |
| VIT_19s0090g01660.t01 | Wine grape | nucleus | 37.6 | 28.24 |
| VIT_07s0031g00600.t01 | Wine grape | cytosol | 24.51 | 24.51 |
| VIT_18s0089g00920.t01 | Wine grape | nucleus | 16.99 | 22.68 |
| VIT_13s0019g03610.t01 | Wine grape | nucleus | 14.76 | 21.46 |
| VIT_18s0001g05840.t01 | Wine grape | nucleus | 16.16 | 21.01 |
| VIT_18s0001g08640.t01 | Wine grape | nucleus | 27.02 | 20.59 |
| VIT_15s0048g02630.t01 | Wine grape | nucleus | 14.76 | 19.85 |
| VIT_18s0122g00660.t01 | Wine grape | nucleus, plastid | 15.6 | 19.65 |
| VIT_19s0014g01570.t01 | Wine grape | nucleus | 24.51 | 19.6 |
| VIT_08s0007g06300.t01 | Wine grape | nucleus | 18.66 | 19.59 |
| VIT_07s0031g01290.t01 | Wine grape | nucleus | 18.94 | 17.35 |
| VIT_08s0056g00690.t01 | Wine grape | nucleus | 21.73 | 16.85 |
| VIT_16s0098g01050.t01 | Wine grape | endoplasmic reticulum, extracellular | 11.14 | 13.75 |
| VIT_06s0009g01180.t01 | Wine grape | mitochondrion, nucleus, plastid | 19.5 | 13.51 |
| VIT_06s0009g01190.t01 | Wine grape | nucleus | 16.43 | 12.91 |
Protein Annotations
| EntrezGene:100246013 | wikigene:100246013 | Gene3D:3.30.70.330 | MapMan:35.1 | EMBL:AM428986 | ProteinID:CAN75779 |
| ProteinID:CAN75779.1 | ProteinID:CCB45122 | ProteinID:CCB45122.1 | UniProt:F6GYT6 | EMBL:FN594973 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | EntrezGene:LOC100246013 |
| wikigene:LOC100246013 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR45276 | PANTHER:PTHR45276:SF1 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000210A043 | ArrayExpress:VIT_18s0117g00150 |
| EnsemblPlantsGene:VIT_18s0117g00150 | EnsemblPlants:VIT_18s0117g00150.t01 | RefSeq:XP_002277226 | RefSeq:XP_002277226.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr18:+:23328424..23333793
Molecular Weight (calculated)
37401.8 Da
IEP (calculated)
7.247
GRAVY (calculated)
-0.598
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSKLKGNTT HTGDGASPGK IFIGGLAKDT TYAAFNKHFE KYGEITDSVI MKDRYTGQPR GFGFVTYADP SVVDSVIEDT HVINGKQVEI KRTIPKGSGQ
101: SKDFKTKKIF VGGLPSTVTE DEFKDFFSKY GKVEEHQIIR DHETNRSRGF GFIIFESEEV VDEILSEGNM IDMAGTQVEI KKAEPKKASN PPHVSAFGSN
201: SRARSFSDGF GGFGSSYGSY DSGFGAAPYR AAGGLGSRLG GYGGYGSDGG EYGGGYGSFG SSNLGGYRGD PSLGYSSRFG PYGGGFSGSY GGSGLGGYGQ
301: GGESYGNYGG SGYASGYDSG AGASYGGAGG LYGRGGYSGS SRYHPYARPG PGFDSNPTV
101: SKDFKTKKIF VGGLPSTVTE DEFKDFFSKY GKVEEHQIIR DHETNRSRGF GFIIFESEEV VDEILSEGNM IDMAGTQVEI KKAEPKKASN PPHVSAFGSN
201: SRARSFSDGF GGFGSSYGSY DSGFGAAPYR AAGGLGSRLG GYGGYGSDGG EYGGGYGSFG SSNLGGYRGD PSLGYSSRFG PYGGGFSGSY GGSGLGGYGQ
301: GGESYGNYGG SGYASGYDSG AGASYGGAGG LYGRGGYSGS SRYHPYARPG PGFDSNPTV
001: MGSRSRNDNF QSGDGASPGK IFIGGLHKDT TNTVFNKHFG KYGEITDSVI MRDRHTGQPR GFGFITFADP SVVDKVIEDT HVINGKQVEI KRTIPKGAGG
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LHL2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.