Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_12s0057g01280.t01 | Wine grape | nucleus | 27.75 | 46.9 |
| TraesCS7D01G281300.1 | Wheat | nucleus | 36.93 | 45.35 |
| TraesCS7B01G178300.1 | Wheat | nucleus | 36.93 | 45.22 |
| HORVU7Hr1G060930.1 | Barley | plasma membrane | 36.7 | 45.2 |
| TraesCS7A01G282600.1 | Wheat | cytosol | 36.24 | 45.14 |
| GSMUA_Achr9P12880_001 | Banana | cytosol | 23.62 | 44.78 |
| Zm00001d052820_P001 | Maize | extracellular, mitochondrion, plasma membrane | 38.99 | 44.39 |
| VIT_19s0015g00920.t01 | Wine grape | nucleus | 33.49 | 41.95 |
| VIT_18s0117g00150.t01 | Wine grape | nucleus | 32.57 | 39.55 |
| KRH17717 | Soybean | nucleus | 31.88 | 39.49 |
| Os08t0320100-01 | Rice | nucleus | 31.65 | 39.43 |
| Bra039380.1-P | Field mustard | nucleus | 32.11 | 38.67 |
| CDY43360 | Canola | nucleus | 32.11 | 38.67 |
| CDY24201 | Canola | nucleus | 31.65 | 38.12 |
| AT3G13224.2 | Thale cress | nucleus | 31.19 | 37.99 |
| PGSC0003DMT400044868 | Potato | nucleus | 29.59 | 37.72 |
| Solyc07g045240.2.1 | Tomato | nucleus | 29.13 | 37.03 |
| OQU81002 | Sorghum | nucleus | 28.44 | 37.01 |
| Os06t0566100-01 | Rice | cytosol, nucleus | 21.33 | 31.85 |
| Os02t0221500-01 | Rice | nucleus | 26.61 | 29.22 |
| PGSC0003DMT400044866 | Potato | extracellular | 29.36 | 23.97 |
| Solyc12g035280.1.1 | Tomato | cytosol, nucleus, plastid | 19.27 | 22.64 |
| Os05t0376000-00 | Rice | cytosol | 10.09 | 21.05 |
| Os02t0755400-01 | Rice | plastid | 8.49 | 21.02 |
| Os11t0637700-01 | Rice | plasma membrane | 21.79 | 20.34 |
| Os07t0124600-01 | Rice | nucleus | 16.28 | 18.83 |
| Os07t0584500-01 | Rice | nucleus | 19.72 | 18.22 |
| Os01t0945800-01 | Rice | nucleus | 15.14 | 18.18 |
| Os01t0876800-00 | Rice | nucleus | 8.72 | 12.67 |
| Os01t0614500-01 | Rice | nucleus | 11.7 | 11.41 |
| Os02t0602600-00 | Rice | nucleus | 10.09 | 11.4 |
| Os06t0622900-01 | Rice | cytosol, mitochondrion, nucleus | 7.11 | 11.27 |
| Os02t0714000-01 | Rice | nucleus, plastid | 7.34 | 11.15 |
| Os06t0220600-01 | Rice | plastid | 8.49 | 10.79 |
| Os01t0958500-01 | Rice | nucleus | 7.57 | 10.65 |
| Os03t0286500-01 | Rice | cytosol, nucleus, plastid | 7.11 | 10.0 |
| Os01t0265800-01 | Rice | nucleus | 11.01 | 9.8 |
| Os04t0636900-02 | Rice | nucleus | 10.55 | 8.93 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:4345910 | EMBL:AK100101 | UniProt:B7EPZ7 | ProteinID:BAT06027.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os08g0492100 | EnsemblPlants:Os08t0492100-02 | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR45276 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000188AE58 | SEG:seg |
Description
Paraneoplastic encephalomyelitis antigen family protein. (Os08t0492100-01);Hypothetical conserved gene. (Os08t0492100-02);Paraneoplastic encephalomyelitis antigen family protein. (Os08t0492100-03)
Coordinates
chr8:-:24313345..24318744
Molecular Weight (calculated)
48322.9 Da
IEP (calculated)
8.595
GRAVY (calculated)
-0.803
Length
436 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKAEARSRE HGGGGGGGSG SAGKIFVGGL PRDTTEADFV KHFGQYGEIV DSVIMRDKHT SQPRGFGFIT YSNPAVVDRV MDDIHEFNGK QVEIKRTIPK
101: DSVQSKDFKT KKIFVGGLPQ ALTEDDFKHF FQKYGPVVDH QIMRDHQTKR SRGFGFIVFS SDQVVDDLLA NGNMIDLAGA KLIDANGLLC SLHRAAGGAD
201: PGRRGATSQG AVVVHLQPPP VDAIDAPRLQ HGVREDPHEG HAGVQPGGQH VVVPRPPPLV PAVHDVVEGE PHGAPHEVVH RPRRRHHPRG AEEHRHVDEP
301: DPRPARERPR QRPHRHRRQR AGEEEVVHLG VQAEAAEHPQ RADHPPDDGG VEEDVVAGAR PRAPLRQLRR VADVAHALQQ PPRRPEVHRR RQHRPDELHE
401: QNRANSLTFS SDESMSGFSR WGLTWTMNME RGGIFM
101: DSVQSKDFKT KKIFVGGLPQ ALTEDDFKHF FQKYGPVVDH QIMRDHQTKR SRGFGFIVFS SDQVVDDLLA NGNMIDLAGA KLIDANGLLC SLHRAAGGAD
201: PGRRGATSQG AVVVHLQPPP VDAIDAPRLQ HGVREDPHEG HAGVQPGGQH VVVPRPPPLV PAVHDVVEGE PHGAPHEVVH RPRRRHHPRG AEEHRHVDEP
301: DPRPARERPR QRPHRHRRQR AGEEEVVHLG VQAEAAEHPQ RADHPPDDGG VEEDVVAGAR PRAPLRQLRR VADVAHALQQ PPRRPEVHRR RQHRPDELHE
401: QNRANSLTFS SDESMSGFSR WGLTWTMNME RGGIFM
001: MGSRSRNDNF QSGDGASPGK IFIGGLHKDT TNTVFNKHFG KYGEITDSVI MRDRHTGQPR GFGFITFADP SVVDKVIEDT HVINGKQVEI KRTIPKGAGG
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LHL2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.