Factsheet for Os02t0221500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 19621931
nucleus: 26035336

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G173900.1	Wheat	nucleus	87.91	85.33
TraesCS6A01G187000.1	Wheat	nucleus	88.67	85.23
EES06526	Sorghum	nucleus	83.63	84.91
TraesCS6B01G217500.1	Wheat	nucleus	87.66	84.06
Zm00001d016349_P002	Maize	nucleus	80.35	83.07
Os06t0566100-01	Rice	cytosol, nucleus	59.19	80.48
HORVU6Hr1G040220.5	Barley	plastid	87.41	74.78
GSMUA_Achr7P13480_001	Banana	nucleus	55.42	65.28
GSMUA_Achr10P...	Banana	nucleus	52.39	62.46
Zm00001d053572_P002	Maize	cytosol	81.11	58.65
VIT_09s0002g02350.t01	Wine grape	cytosol	47.1	52.97
Solyc03g121710.2.1	Tomato	nucleus	35.26	52.04
KRH23293	Soybean	nucleus	42.07	47.31
CDY48318	Canola	nucleus	44.08	47.04
CDY26229	Canola	nucleus	43.83	46.9
PGSC0003DMT400006638	Potato	nucleus	45.59	46.89
AT1G17640.1	Thale cress	nucleus	42.32	45.53
Os08t0320100-01	Rice	nucleus	39.8	45.14
Solyc06g062740.1.1	Tomato	cytosol	20.4	41.12
PGSC0003DMT400012372	Potato	nucleus	30.23	40.4
PGSC0003DMT400012369	Potato	nucleus	37.78	34.32
Solyc06g062730.1.1	Tomato	nucleus	30.73	33.24
Os05t0376000-00	Rice	cytosol	14.86	28.23
Os01t0945800-01	Rice	nucleus	24.69	27.0
Os08t0492100-02	Rice	nucleus	29.22	26.61
Os11t0637700-01	Rice	plasma membrane	31.23	26.55
Os07t0584500-01	Rice	nucleus	30.98	26.06
Os07t0124600-01	Rice	nucleus	23.43	24.67
Os02t0755400-01	Rice	plastid	10.33	23.3
Os01t0614500-01	Rice	nucleus	24.43	21.7
Os01t0876800-00	Rice	nucleus	16.37	21.67
Os02t0714000-01	Rice	nucleus, plastid	15.62	21.6
Os06t0622900-01	Rice	cytosol, mitochondrion, nucleus	14.86	21.45
Os01t0958500-01	Rice	nucleus	15.62	20.0
Os03t0286500-01	Rice	cytosol, nucleus, plastid	13.35	17.1
Os01t0265800-01	Rice	nucleus	20.91	16.94
Os02t0602600-00	Rice	nucleus	15.11	15.54
Os06t0220600-01	Rice	plastid	13.1	15.16
Os04t0636900-02	Rice	nucleus	17.88	13.79

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:4328758	ProteinID:BAD17624.1	ProteinID:BAD17632.1	ProteinID:BAF08236.1
ProteinID:BAS77706.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488
InterPro:Hrp1_RRM2	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os02g0221500	EnsemblPlants:Os02t0221500-01
PFAM:PF00076	PFscan:PS50102	UniProt:Q6YVH3	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000035AF67	RefSeq:XP_015626578.1	SEG:seg	:	:

Description

RNA binding protein INucleotide-binding, alpha-beta plait domain containing protein. (Os02t0221500-01)

Coordinates

chr2:-:6784206..6788332

Molecular Weight (calculated)

40267.5 Da

IEP (calculated)

5.805

GRAVY (calculated)

-0.780

Length

397 amino acids

Sequence
(BLAST)

001: MAGYPEENQH GMNGYEEEEE VEEVEGFDEE GRPGRRGGGG RDGGDGGAYG DASGDDGRAP GGDSSGKIFV GGVAWETTEE SFSKHFEKYG AITDSVIMKD
101: KHTKMPRGFG FVTFSDPSVI DKVLEDEHVI DGRTVEVKRT VPREEMSSKD GPKTRKIFVG GLPSSLTEDE LREHFSPYGK IVEHQIMLDH STGRSRGFGF
201: VTFESEDSVE RVISEGRMRD LGGKQVEIKK AEPKKHGGDH SSNGRSSHGS GGGYRSSYRS GGAAASGGGG GGGGGGSGSS GGYGYGAGYR SAGGGYYDST
301: AYGYGRGGYG YGGNAGFGSG YGGGYGGSLY GGAYGAYGAY GGGAYGGGAY GGGAYGGGAY GGAPGAYGGA GGYGSYGGAG AGGAGGRGSS RYHPYGK

Best Arabidopsis Sequence Match ( AT1G17640.3 )
(BLAST)

001: MDYNSDRGYD DSYHHHVHDE QLPQSDFEVE TFDDRRNGGA AVDTGGIQMK HSVDHRHSSS SMSSPGKLFV GGVSWETTAE TFANYFGKFG EVVDSVIMTD
101: RITGNPRGFG FVTFADSAVA EKVLEEDHVI DDRKVDLKRT LPRGDKDTDI KAVSKTRKIF VGGLPPLLEE DELKNYFCVY GDIIEHQIMY DHHTGRSRGF
201: GFVTFQTEDS VDRLFSDGKV HELGDKQVEI KRAEPKRTGR DNSFRSYGAS GKYDQEDSYS GKANEDYSMY SGYGGYGGYG AYAGNSMVNP AGFYGYGGGY
301: GYGYGYGGQM FNMGYGAGGY SHMGSGYGVA AAAAYGGGKS HGNGNNGSSS GKGNGTNGSG PDRYHPYQK

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I906]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.