Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G187000.1 | Wheat | nucleus | 86.85 | 97.58 |
| TraesCS6D01G173900.1 | Wheat | nucleus | 85.78 | 97.31 |
| TraesCS6B01G217500.1 | Wheat | nucleus | 86.21 | 96.62 |
| Os02t0221500-01 | Rice | nucleus | 74.78 | 87.41 |
| EES06526 | Sorghum | nucleus | 71.55 | 84.91 |
| Zm00001d016349_P002 | Maize | nucleus | 68.75 | 83.07 |
| HORVU7Hr1G087550.1 | Barley | nucleus | 61.64 | 71.68 |
| GSMUA_Achr7P13480_001 | Banana | nucleus | 46.98 | 64.69 |
| GSMUA_Achr10P... | Banana | nucleus | 44.83 | 62.46 |
| Zm00001d053572_P002 | Maize | cytosol | 71.77 | 60.66 |
| Solyc03g121710.2.1 | Tomato | nucleus | 31.25 | 53.9 |
| VIT_09s0002g02350.t01 | Wine grape | cytosol | 39.22 | 51.56 |
| PGSC0003DMT400006638 | Potato | nucleus | 40.3 | 48.45 |
| CDY26229 | Canola | nucleus | 37.28 | 46.63 |
| CDY48318 | Canola | nucleus | 37.28 | 46.51 |
| KRH23293 | Soybean | nucleus | 35.34 | 46.46 |
| AT1G17640.1 | Thale cress | nucleus | 36.42 | 45.8 |
| HORVU7Hr1G060930.1 | Barley | plasma membrane | 34.05 | 44.63 |
| Solyc06g062740.1.1 | Tomato | cytosol | 17.46 | 41.12 |
| PGSC0003DMT400012372 | Potato | nucleus | 25.0 | 39.06 |
| HORVU7Hr1G036900.1 | Barley | cytosol, plastid | 5.17 | 35.82 |
| PGSC0003DMT400012369 | Potato | nucleus | 31.47 | 33.41 |
| Solyc06g062730.1.1 | Tomato | nucleus | 26.29 | 33.24 |
| HORVU1Hr1G039790.1 | Barley | nucleus | 30.39 | 27.65 |
| HORVU1Hr1G057660.1 | Barley | cytosol | 20.91 | 26.65 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 26.51 | 26.57 |
| HORVU3Hr1G105930.10 | Barley | cytoskeleton, cytosol, nucleus | 21.12 | 26.42 |
| HORVU2Hr1G061380.2 | Barley | nucleus | 20.91 | 26.08 |
| HORVU6Hr1G070150.1 | Barley | plastid | 8.41 | 23.35 |
| HORVU6Hr1G070140.3 | Barley | plastid | 7.33 | 21.79 |
| HORVU3Hr1G053990.1 | Barley | nucleus | 20.04 | 21.09 |
| HORVU6Hr1G054690.5 | Barley | plastid | 8.19 | 20.21 |
| HORVU5Hr1G098440.5 | Barley | cytosol, nucleus | 15.52 | 19.89 |
| HORVU6Hr1G070170.1 | Barley | mitochondrion, nucleus, plastid | 13.79 | 19.28 |
| HORVU7Hr1G093450.6 | Barley | nucleus | 12.07 | 19.05 |
| HORVU4Hr1G063360.1 | Barley | nucleus | 10.99 | 18.61 |
| HORVU7Hr1G036920.2 | Barley | mitochondrion, nucleus | 11.21 | 17.39 |
| HORVU3Hr1G110370.1 | Barley | cytosol, mitochondrion, nucleus | 11.64 | 17.25 |
| HORVU2Hr1G116150.4 | Barley | nucleus | 15.09 | 16.91 |
| HORVU4Hr1G057110.23 | Barley | nucleus | 10.99 | 16.45 |
| HORVU3Hr1G037280.1 | Barley | nucleus, plastid | 17.03 | 16.19 |
| HORVU6Hr1G078060.1 | Barley | plastid | 10.78 | 15.82 |
| HORVU2Hr1G116230.1 | Barley | nucleus | 11.42 | 13.05 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G040220.5 | EnsemblPlantsGene:HORVU6Hr1G040220 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR45276 | PFAM:PF00076 | PFscan:PS50102 | PRINTS:PR01228 | SEG:seg | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000B479D99 | UniProt:A0A287U0I6 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chrchr6H:-:215060328..215064433
Molecular Weight (calculated)
46696.2 Da
IEP (calculated)
6.854
GRAVY (calculated)
-0.659
Length
464 amino acids
Sequence
(BLAST)
(BLAST)
001: GLDLAPPPFF LSPPPPCKPV PEAALLGFAP APNPTTRLPR FRQRRRLGAG GMAGYPEDNQ HAMNGYEDEV EEVEEVDEEG HPGRRGRRDV GDGGGYGDAG
101: GDDGRAGGGD SSGKIFVGGV AWETTEESFS KHFGKYGAIT DSVIMKDKHT KMPRGFGFVT FSDPSVIDKV LEDEHNIDGR TVEVKRTVPR EEMSSKDGPK
201: TRKIFVGGLP STLTEDDLRD HFSSYGNVVE HQIMVDHSTG RSRGFGFVTF ESEDSVERVI SEGRMRDLGG KQVEIKKAEP KKHGGDHSSN GRSSHSGGGG
301: YRSSYRSGGA AAGGGSSSAG GGGYGYGAGG HRSAAAGSYY DSTGYGYGRG GYGAAAAAAA YGGNAGYGSG FGGGYGGSMY GGAYGAYGPY GGGAYGAGAY
401: GGGAYGGGAY GGGAYGGGAP GGYGAGGYGS YGGAGAGAGA GGAGGGGGGS AGGRGSSRYH PYGK
101: GDDGRAGGGD SSGKIFVGGV AWETTEESFS KHFGKYGAIT DSVIMKDKHT KMPRGFGFVT FSDPSVIDKV LEDEHNIDGR TVEVKRTVPR EEMSSKDGPK
201: TRKIFVGGLP STLTEDDLRD HFSSYGNVVE HQIMVDHSTG RSRGFGFVTF ESEDSVERVI SEGRMRDLGG KQVEIKKAEP KKHGGDHSSN GRSSHSGGGG
301: YRSSYRSGGA AAGGGSSSAG GGGYGYGAGG HRSAAAGSYY DSTGYGYGRG GYGAAAAAAA YGGNAGYGSG FGGGYGGSMY GGAYGAYGPY GGGAYGAGAY
401: GGGAYGGGAY GGGAYGGGAP GGYGAGGYGS YGGAGAGAGA GGAGGGGGGS AGGRGSSRYH PYGK
001: MGSRSRNDNF QSGDGASPGK IFIGGLHKDT TNTVFNKHFG KYGEITDSVI MRDRHTGQPR GFGFITFADP SVVDKVIEDT HVINGKQVEI KRTIPKGAGG
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LHL2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.