Factsheet for HORVU1Hr1G039790.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G126610.7
HORVU7Hr1G067800.6

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33410.1	HORVU7Hr1G067800.6	AT3G21215.1	21798944
AT4G14300.1	HORVU2Hr1G126610.7	AT2G16950.1	14756317

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G168200.1	Wheat	nucleus	87.84	99.11
TraesCS1D01G147600.1	Wheat	nucleus	87.84	98.68
TraesCS1A01G150600.1	Wheat	nucleus	87.84	98.68
KXG38359	Sorghum	nucleus	72.75	81.9
Zm00001d032739_P001	Maize	nucleus	70.98	81.72
Zm00001d014058_P002	Maize	plastid	72.55	76.76
GSMUA_Achr10P...	Banana	nucleus	32.94	67.74
GSMUA_Achr5P17700_001	Banana	cytosol	11.96	65.59
CDY12068	Canola	nucleus	40.78	58.1
AT4G14300.1	Thale cress	nucleus	46.47	57.66
VIT_07s0005g03980.t01	Wine grape	nucleus	49.02	57.6
AT2G33410.1	Thale cress	nucleus	45.29	57.18
Bra005496.1-P	Field mustard	nucleus	41.57	56.38
CDY17173	Canola	nucleus	41.57	56.23
Bra021850.1-P	Field mustard	nucleus	40.39	56.13
CDY67299	Canola	nucleus	41.76	55.91
CDX90262	Canola	nucleus	41.76	55.76
GSMUA_Achr1P10970_001	Banana	nucleus	47.65	55.73
CDX79527	Canola	nucleus	44.31	55.66
CDY23739	Canola	nucleus	41.76	55.61
Bra010757.1-P	Field mustard	nucleus	41.57	55.5
KRH34534	Soybean	nucleus	50.98	55.2
CDX84689	Canola	nucleus	44.12	55.15
Bra022938.1-P	Field mustard	nucleus	44.12	55.15
CDY37724	Canola	nucleus	34.31	54.18
KRG92276	Soybean	endoplasmic reticulum	49.8	53.36
KRH07772	Soybean	cytosol	10.2	53.06
Solyc09g072790.2.1	Tomato	nucleus	32.55	42.13
PGSC0003DMT400009762	Potato	nucleus	32.75	42.07
HORVU0Hr1G008280.1	Barley	nucleus	35.29	38.88
HORVU7Hr1G036900.1	Barley	cytosol, plastid	4.71	35.82
HORVU7Hr1G087550.1	Barley	nucleus	25.49	32.58
HORVU2Hr1G061380.2	Barley	nucleus	22.55	30.91
HORVU7Hr1G060930.1	Barley	plasma membrane	21.18	30.51
HORVU6Hr1G040220.5	Barley	plastid	27.65	30.39
HORVU1Hr1G057660.1	Barley	cytosol	19.41	27.2
HORVU5Hr1G098440.5	Barley	cytosol, nucleus	19.02	26.8
HORVU3Hr1G105930.10	Barley	cytoskeleton, cytosol, nucleus	17.25	23.72
HORVU6Hr1G070150.1	Barley	plastid	7.06	21.56
HORVU6Hr1G070140.3	Barley	plastid	6.08	19.87
HORVU7Hr1G093450.6	Barley	nucleus	11.18	19.39
HORVU4Hr1G063360.1	Barley	nucleus	10.2	18.98
HORVU3Hr1G053990.1	Barley	nucleus	15.49	17.91
HORVU2Hr1G116150.4	Barley	nucleus	14.31	17.63
HORVU6Hr1G070170.1	Barley	mitochondrion, nucleus, plastid	11.37	17.47
HORVU3Hr1G110370.1	Barley	cytosol, mitochondrion, nucleus	10.59	17.25
HORVU6Hr1G054690.5	Barley	plastid	6.27	17.02
HORVU6Hr1G078060.1	Barley	plastid	9.61	15.51
HORVU7Hr1G036920.2	Barley	mitochondrion, nucleus	9.02	15.38
HORVU4Hr1G057110.23	Barley	nucleus	8.82	14.52
HORVU3Hr1G037280.1	Barley	nucleus, plastid	13.33	13.93
HORVU2Hr1G116230.1	Barley	nucleus	9.8	12.32

Protein Annotations

EnsemblPlants:HORVU1Hr1G039790.1	EnsemblPlantsGene:HORVU1Hr1G039790	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:DAZAP1_RRM2	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44291	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000B464626	UniProt:A0A287F802	MapMan:35.1	:	:

Description

No Description!

Coordinates

chrchr1H:+:280248120..280253130

Molecular Weight (calculated)

51364.1 Da

IEP (calculated)

6.808

GRAVY (calculated)

-0.713

Length

510 amino acids

Sequence
(BLAST)

001: APRTRPKISQ SPPPPPPEAE IPQFPSLPLL SLSLHRPPPA PHPSARDSEE RRKEAAEMES DQGKLFIGGI SWETTEEKLQ EHFSNFGEVS QAAVMRDKLT
101: GRPRGFGFVV YADPASVDAA LQEPHTLDGR TVDVKRALSR EEQQATKAVN PSAGRNAGGG GGGGGGGDAG GARTKKIFVG GLPSSLTDEE FRQYFQTFGA
201: VTDVVVMYDQ TTQRPRGFGF ITFDSEDAVD RVLHKTFHDL GGKMVEVKRA LPREANPGSG GGGRSMGGGG FHSNNGPNSN ASSYDGRGDA GRYGQAQQGS
301: GGYPGYGAGA YGSAPTGYGY GHTNPGTTYG NYGSAGYGGV PAAYAGAYGN PSAAASGYQG GPPGANRGPW GSQAPSGYGT GGYAGNAGYG AWNSSSAGGN
401: APTSQAPGAA AGYGNQGYGY GGYGGDASYG NHGGYGAYGG RGDGAGNPAT GAASGYGAAG YGSGNGNSGY PNAWADPSQG GGFGGSVNGA SEGQSNYGSG
501: YGGMQPRVAQ

Best Arabidopsis Sequence Match ( AT2G33410.1 )
(BLAST)

001: MESDQGKLFI GGISWDTDEN LLREYFSNFG EVLQVTVMRE KATGRPRGFG FVAFSDPAVI DRVLQDKHHI DNRDVDVKRA MSREEQSPAG RSGTFNASRN
101: FDSGANVRTK KIFVGGLPPA LTSDEFRAYF ETYGPVSDAV IMIDQTTQRP RGFGFVSFDS EDSVDLVLHK TFHDLNGKQV EVKRALPKDA NPGIASGGGR
201: GSGGAGGFPG YGGSGGSGYE GRVDSNRYMQ PQNTGSGYPP YGGSGYGTGY GYGSNGVGYG GFGGYGNPAG APYGNPSVPG AGFGSGPRSS WGAQAPSGYG
301: NVGYGNAAPW GGSGGPGSAV MGQAGASAGY GSQGYGYGGN DSSYGTPSAY GAVGGRSGNM PNNHGGGGYA DALDGSGGYG NHQGNNGQAG YGGGYGSGRQ
401: AQQQ

Arabidopsis Description

Putative RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:O22791]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.