Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||
---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
HORVU2Hr1G116230.1 | Barley | nucleus | 81.16 | 82.76 |
TraesCS2D01G529100.1 | Wheat | nucleus | 95.17 | 77.41 |
TraesCS2B01G556700.1 | Wheat | nucleus | 94.93 | 77.21 |
TraesCS2A01G526400.1 | Wheat | nucleus | 94.44 | 76.82 |
Os04t0636900-02 | Rice | nucleus | 81.16 | 65.24 |
Zm00001d026397_P001 | Maize | nucleus, plasma membrane | 77.78 | 61.8 |
EES12939 | Sorghum | nucleus | 78.5 | 61.67 |
Zm00001d002141_P006 | Maize | nucleus | 76.81 | 61.04 |
GSMUA_AchrUn_... | Banana | nucleus | 34.06 | 32.87 |
HORVU7Hr1G036900.1 | Barley | cytosol, plastid | 5.31 | 32.84 |
HORVU6Hr1G054690.5 | Barley | plastid | 14.73 | 32.45 |
GSMUA_Achr4P09210_001 | Banana | nucleus | 32.61 | 30.54 |
CDY27186 | Canola | nucleus | 33.09 | 30.51 |
Bra007277.1-P | Field mustard | nucleus | 33.09 | 30.51 |
KRG94993 | Soybean | nucleus | 35.27 | 30.48 |
CDX72106 | Canola | nucleus | 33.09 | 30.11 |
CDY06947 | Canola | nucleus | 31.16 | 30.0 |
Bra016954.1-P | Field mustard | nucleus | 31.4 | 29.55 |
GSMUA_Achr10P... | Banana | nucleus | 16.43 | 29.44 |
KRH66628 | Soybean | nucleus | 34.06 | 29.01 |
Solyc01g008970.2.1 | Tomato | nucleus | 26.09 | 28.72 |
CDY57580 | Canola | nucleus | 30.68 | 28.67 |
VIT_08s0056g00690.t01 | Wine grape | nucleus | 31.64 | 28.29 |
AT3G56860.10 | Thale cress | nucleus | 32.61 | 28.24 |
CDX76015 | Canola | nucleus | 20.77 | 28.2 |
AT2G41060.3 | Thale cress | nucleus | 30.68 | 28.16 |
HORVU3Hr1G053990.1 | Barley | nucleus | 29.95 | 28.12 |
Bra014667.1-P | Field mustard | nucleus | 20.53 | 27.87 |
KRH73477 | Soybean | nucleus | 32.61 | 27.22 |
KRH14673 | Soybean | nucleus | 32.13 | 26.92 |
PGSC0003DMT400058431 | Potato | nucleus | 31.4 | 26.53 |
HORVU3Hr1G037280.1 | Barley | nucleus, plastid | 30.92 | 26.23 |
VIT_06s0009g01180.t01 | Wine grape | mitochondrion, nucleus, plastid | 32.61 | 26.06 |
HORVU6Hr1G070140.3 | Barley | plastid | 9.42 | 25.0 |
HORVU6Hr1G070150.1 | Barley | plastid | 9.66 | 23.95 |
CDY47382 | Canola | golgi, plastid | 20.77 | 20.67 |
HORVU7Hr1G036920.2 | Barley | mitochondrion, nucleus | 13.29 | 18.39 |
HORVU4Hr1G063360.1 | Barley | nucleus | 11.84 | 17.88 |
HORVU3Hr1G105930.10 | Barley | cytoskeleton, cytosol, nucleus | 15.94 | 17.79 |
HORVU7Hr1G087550.1 | Barley | nucleus | 16.91 | 17.54 |
HORVU1Hr1G057660.1 | Barley | cytosol | 15.22 | 17.31 |
HORVU7Hr1G093450.6 | Barley | nucleus | 11.84 | 16.67 |
HORVU3Hr1G110370.1 | Barley | cytosol, mitochondrion, nucleus | 12.56 | 16.61 |
HORVU6Hr1G078060.1 | Barley | plastid | 12.56 | 16.46 |
HORVU5Hr1G098440.5 | Barley | cytosol, nucleus | 13.77 | 15.75 |
HORVU2Hr1G061380.2 | Barley | nucleus | 14.01 | 15.59 |
HORVU6Hr1G070170.1 | Barley | mitochondrion, nucleus, plastid | 12.32 | 15.36 |
HORVU4Hr1G057110.23 | Barley | nucleus | 11.35 | 15.16 |
HORVU6Hr1G040220.5 | Barley | plastid | 16.91 | 15.09 |
HORVU0Hr1G008280.1 | Barley | nucleus | 16.43 | 14.69 |
HORVU1Hr1G039790.1 | Barley | nucleus | 17.63 | 14.31 |
HORVU7Hr1G060930.1 | Barley | plasma membrane | 12.08 | 14.12 |
Protein Annotations
EnsemblPlants:HORVU2Hr1G116150.4 | EnsemblPlantsGene:HORVU2Hr1G116150 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
PANTHER:PTHR44578 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
UniParc:UPI000B4826CE | UniProt:A0A287JJU0 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chrchr2H:-:737023627..737034941
Molecular Weight (calculated)
41659.6 Da
IEP (calculated)
9.499
GRAVY (calculated)
-0.190
Length
414 amino acids
Sequence
(BLAST)
(BLAST)
001: XXXMAAVRRA AECDPASRKL FVHGLGWGAG VEDLRSAFSR FGELEDCRVI TDKQSGKSKG YGFVLFQSRT SALRALRRPQ LSIGGRLAFC HLAASGPAPP
101: ASQSQNPSSN ASSGAANNSA PASSSSQADN MQRKIFVGNV HADVDVNRLY EYFSQFGEIE EGPLGFDKST GKPKGFALFV YKSVDSARRA LEEPMRSFDG
201: KMLNVQKAID GRTKGTSGSN SSANNANATA ASTQMTVPSI AAINPYDPSA YGAAAVHDMG FAQQAALLGM GAQQQAFAQP NTAMLAMMAA AMQNPAMLAS
301: LNPAFAAAAL GAGGQAGIPG FGAQGFGTQG FGAAGINFPN ASGLQGAAAY QGGPPGFQGS PGFPTSAGFQ VGQAASQSGT TAAATGAAAY QTGAAGQGQV
401: SNSQIGGTGF QGGY
101: ASQSQNPSSN ASSGAANNSA PASSSSQADN MQRKIFVGNV HADVDVNRLY EYFSQFGEIE EGPLGFDKST GKPKGFALFV YKSVDSARRA LEEPMRSFDG
201: KMLNVQKAID GRTKGTSGSN SSANNANATA ASTQMTVPSI AAINPYDPSA YGAAAVHDMG FAQQAALLGM GAQQQAFAQP NTAMLAMMAA AMQNPAMLAS
301: LNPAFAAAAL GAGGQAGIPG FGAQGFGTQG FGAAGINFPN ASGLQGAAAY QGGPPGFQGS PGFPTSAGFQ VGQAASQSGT TAAATGAAAY QTGAAGQGQV
401: SNSQIGGTGF QGGY
001: MTKKRKLESE SNETSEPTEK QQQQCEKEDP EIRNVDNQRD DDEQVVEQDT LKEMHEEEAK GEDNIEAETS SGSGNQGNED DDEEEPIEDL LEPFSKDQLL
101: ILLKEAAERH RDVANRIRIV ADEDLVHRKI FVHGLGWDTK ADSLIDAFKQ YGEIEDCKCV VDKVSGQSKG YGFILFKSRS GARNALKQPQ KKIGTRMTAC
201: QLASIGPVQG NPVVAPAQHF NPENVQRKIY VSNVSADIDP QKLLEFFSRF GEIEEGPLGL DKATGRPKGF ALFVYRSLES AKKALEEPHK TFEGHVLHCH
301: KANDGPKQVK QHQHNHNSHN QNSRYQRNDN NGYGAPGGHG HFIAGNNQAV QAFNPAIGQA LTALLASQGA GLGLNQAFGQ ALLGTLGTAS PGAVGGMPSG
401: YGTQANISPG VYPGYGAQAG YQGGYQTQQP GQGGAGRGQH GAGYGGPYMG R
101: ILLKEAAERH RDVANRIRIV ADEDLVHRKI FVHGLGWDTK ADSLIDAFKQ YGEIEDCKCV VDKVSGQSKG YGFILFKSRS GARNALKQPQ KKIGTRMTAC
201: QLASIGPVQG NPVVAPAQHF NPENVQRKIY VSNVSADIDP QKLLEFFSRF GEIEEGPLGL DKATGRPKGF ALFVYRSLES AKKALEEPHK TFEGHVLHCH
301: KANDGPKQVK QHQHNHNSHN QNSRYQRNDN NGYGAPGGHG HFIAGNNQAV QAFNPAIGQA LTALLASQGA GLGLNQAFGQ ALLGTLGTAS PGAVGGMPSG
401: YGTQANISPG VYPGYGAQAG YQGGYQTQQP GQGGAGRGQH GAGYGGPYMG R
Arabidopsis Description
UBA2BUBP1-associated protein 2B [Source:UniProtKB/Swiss-Prot;Acc:O80678]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.