Skip to main content
crop-pal logo
Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU2Hr1G116230.1 Barley nucleus 81.16 82.76
TraesCS2D01G529100.1 Wheat nucleus 95.17 77.41
TraesCS2B01G556700.1 Wheat nucleus 94.93 77.21
TraesCS2A01G526400.1 Wheat nucleus 94.44 76.82
Os04t0636900-02 Rice nucleus 81.16 65.24
Zm00001d026397_P001 Maize nucleus, plasma membrane 77.78 61.8
EES12939 Sorghum nucleus 78.5 61.67
Zm00001d002141_P006 Maize nucleus 76.81 61.04
GSMUA_AchrUn_... Banana nucleus 34.06 32.87
HORVU7Hr1G036900.1 Barley cytosol, plastid 5.31 32.84
HORVU6Hr1G054690.5 Barley plastid 14.73 32.45
GSMUA_Achr4P09210_001 Banana nucleus 32.61 30.54
CDY27186 Canola nucleus 33.09 30.51
Bra007277.1-P Field mustard nucleus 33.09 30.51
KRG94993 Soybean nucleus 35.27 30.48
CDX72106 Canola nucleus 33.09 30.11
CDY06947 Canola nucleus 31.16 30.0
Bra016954.1-P Field mustard nucleus 31.4 29.55
GSMUA_Achr10P... Banana nucleus 16.43 29.44
KRH66628 Soybean nucleus 34.06 29.01
Solyc01g008970.2.1 Tomato nucleus 26.09 28.72
CDY57580 Canola nucleus 30.68 28.67
VIT_08s0056g00690.t01 Wine grape nucleus 31.64 28.29
AT3G56860.10 Thale cress nucleus 32.61 28.24
CDX76015 Canola nucleus 20.77 28.2
AT2G41060.3 Thale cress nucleus 30.68 28.16
HORVU3Hr1G053990.1 Barley nucleus 29.95 28.12
Bra014667.1-P Field mustard nucleus 20.53 27.87
KRH73477 Soybean nucleus 32.61 27.22
KRH14673 Soybean nucleus 32.13 26.92
PGSC0003DMT400058431 Potato nucleus 31.4 26.53
HORVU3Hr1G037280.1 Barley nucleus, plastid 30.92 26.23
VIT_06s0009g01180.t01 Wine grape mitochondrion, nucleus, plastid 32.61 26.06
HORVU6Hr1G070140.3 Barley plastid 9.42 25.0
HORVU6Hr1G070150.1 Barley plastid 9.66 23.95
CDY47382 Canola golgi, plastid 20.77 20.67
HORVU7Hr1G036920.2 Barley mitochondrion, nucleus 13.29 18.39
HORVU4Hr1G063360.1 Barley nucleus 11.84 17.88
HORVU3Hr1G105930.10 Barley cytoskeleton, cytosol, nucleus 15.94 17.79
HORVU7Hr1G087550.1 Barley nucleus 16.91 17.54
HORVU1Hr1G057660.1 Barley cytosol 15.22 17.31
HORVU7Hr1G093450.6 Barley nucleus 11.84 16.67
HORVU3Hr1G110370.1 Barley cytosol, mitochondrion, nucleus 12.56 16.61
HORVU6Hr1G078060.1 Barley plastid 12.56 16.46
HORVU5Hr1G098440.5 Barley cytosol, nucleus 13.77 15.75
HORVU2Hr1G061380.2 Barley nucleus 14.01 15.59
HORVU6Hr1G070170.1 Barley mitochondrion, nucleus, plastid 12.32 15.36
HORVU4Hr1G057110.23 Barley nucleus 11.35 15.16
HORVU6Hr1G040220.5 Barley plastid 16.91 15.09
HORVU0Hr1G008280.1 Barley nucleus 16.43 14.69
HORVU1Hr1G039790.1 Barley nucleus 17.63 14.31
HORVU7Hr1G060930.1 Barley plasma membrane 12.08 14.12
Protein Annotations
EnsemblPlants:HORVU2Hr1G116150.4EnsemblPlantsGene:HORVU2Hr1G116150Gene3D:3.30.70.330GO:GO:0003674GO:GO:0003676GO:GO:0003723
GO:GO:0005488InterPro:IPR000504InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sfInterPro:RBD_domain_sfInterPro:RRM_dom
PANTHER:PTHR44578PFAM:PF00076PFscan:PS50102SEG:segSMART:SM00360SUPFAM:SSF54928
UniParc:UPI000B4826CEUniProt:A0A287JJU0MapMan:35.1:::
Description
No Description!
Coordinates
chrchr2H:-:737023627..737034941
Molecular Weight (calculated)
41659.6 Da
IEP (calculated)
9.499
GRAVY (calculated)
-0.190
Length
414 amino acids
Sequence
(BLAST)
001: XXXMAAVRRA AECDPASRKL FVHGLGWGAG VEDLRSAFSR FGELEDCRVI TDKQSGKSKG YGFVLFQSRT SALRALRRPQ LSIGGRLAFC HLAASGPAPP
101: ASQSQNPSSN ASSGAANNSA PASSSSQADN MQRKIFVGNV HADVDVNRLY EYFSQFGEIE EGPLGFDKST GKPKGFALFV YKSVDSARRA LEEPMRSFDG
201: KMLNVQKAID GRTKGTSGSN SSANNANATA ASTQMTVPSI AAINPYDPSA YGAAAVHDMG FAQQAALLGM GAQQQAFAQP NTAMLAMMAA AMQNPAMLAS
301: LNPAFAAAAL GAGGQAGIPG FGAQGFGTQG FGAAGINFPN ASGLQGAAAY QGGPPGFQGS PGFPTSAGFQ VGQAASQSGT TAAATGAAAY QTGAAGQGQV
401: SNSQIGGTGF QGGY
Best Arabidopsis Sequence Match ( AT2G41060.1 )
(BLAST)
001: MTKKRKLESE SNETSEPTEK QQQQCEKEDP EIRNVDNQRD DDEQVVEQDT LKEMHEEEAK GEDNIEAETS SGSGNQGNED DDEEEPIEDL LEPFSKDQLL
101: ILLKEAAERH RDVANRIRIV ADEDLVHRKI FVHGLGWDTK ADSLIDAFKQ YGEIEDCKCV VDKVSGQSKG YGFILFKSRS GARNALKQPQ KKIGTRMTAC
201: QLASIGPVQG NPVVAPAQHF NPENVQRKIY VSNVSADIDP QKLLEFFSRF GEIEEGPLGL DKATGRPKGF ALFVYRSLES AKKALEEPHK TFEGHVLHCH
301: KANDGPKQVK QHQHNHNSHN QNSRYQRNDN NGYGAPGGHG HFIAGNNQAV QAFNPAIGQA LTALLASQGA GLGLNQAFGQ ALLGTLGTAS PGAVGGMPSG
401: YGTQANISPG VYPGYGAQAG YQGGYQTQQP GQGGAGRGQH GAGYGGPYMG R
Arabidopsis Description
UBA2BUBP1-associated protein 2B [Source:UniProtKB/Swiss-Prot;Acc:O80678]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.