Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
endoplasmic reticulum: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG94993 | Soybean | nucleus | 88.89 | 90.19 |
| VIT_08s0056g00690.t01 | Wine grape | nucleus | 60.91 | 63.93 |
| Bra007277.1-P | Field mustard | nucleus | 56.17 | 60.8 |
| CDY27186 | Canola | nucleus | 56.17 | 60.8 |
| CDX72106 | Canola | nucleus | 56.79 | 60.66 |
| AT2G41060.3 | Thale cress | nucleus | 53.5 | 57.65 |
| CDX76015 | Canola | nucleus | 36.01 | 57.38 |
| AT3G56860.10 | Thale cress | nucleus | 55.97 | 56.9 |
| Bra014667.1-P | Field mustard | nucleus | 34.98 | 55.74 |
| CDY06947 | Canola | nucleus | 48.56 | 54.88 |
| CDY57580 | Canola | nucleus | 48.97 | 53.72 |
| Bra016954.1-P | Field mustard | nucleus | 48.56 | 53.64 |
| GSMUA_Achr6P15950_001 | Banana | nucleus | 51.03 | 53.22 |
| KRH14673 | Soybean | nucleus | 50.62 | 49.8 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 46.5 | 49.78 |
| TraesCS3D01G186500.1 | Wheat | nucleus | 48.77 | 49.38 |
| TraesCS3B01G211700.1 | Wheat | nucleus | 45.88 | 49.23 |
| TraesCS3A01G181900.1 | Wheat | nucleus | 48.35 | 48.96 |
| KRH73477 | Soybean | nucleus | 49.79 | 48.79 |
| HORVU3Hr1G037280.1 | Barley | nucleus, plastid | 48.35 | 48.16 |
| EES02736 | Sorghum | plastid | 45.68 | 47.84 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 42.59 | 47.7 |
| Os01t0265800-01 | Rice | nucleus | 47.33 | 46.94 |
| CDY47382 | Canola | golgi, plastid | 35.19 | 41.11 |
| GSMUA_Achr10P... | Banana | nucleus | 17.7 | 37.23 |
| GSMUA_AchrUn_... | Banana | nucleus | 30.66 | 34.73 |
| GSMUA_Achr4P09210_001 | Banana | nucleus | 31.07 | 34.16 |
| HORVU2Hr1G116150.4 | Barley | nucleus | 29.01 | 34.06 |
| KXG30578 | Sorghum | nucleus | 25.72 | 33.6 |
| KRH50169 | Soybean | nucleus | 26.13 | 33.07 |
| KRH71299 | Soybean | nucleus | 26.13 | 33.07 |
| HORVU6Hr1G054690.5 | Barley | plastid | 12.76 | 32.98 |
| KRH26210 | Soybean | nucleus | 29.63 | 32.95 |
| KRH55109 | Soybean | nucleus | 30.04 | 32.88 |
| TraesCS2A01G526400.1 | Wheat | nucleus | 34.36 | 32.81 |
| Os04t0636900-02 | Rice | nucleus | 34.57 | 32.62 |
| TraesCS2D01G529100.1 | Wheat | nucleus | 34.16 | 32.61 |
| TraesCS2B01G556700.1 | Wheat | nucleus | 33.95 | 32.42 |
| EES12939 | Sorghum | nucleus | 34.98 | 32.26 |
| Zm00001d026397_P001 | Maize | nucleus, plasma membrane | 34.57 | 32.25 |
| Os02t0602600-00 | Rice | nucleus | 25.51 | 32.12 |
| Zm00001d002141_P006 | Maize | nucleus | 33.95 | 31.67 |
| KRH75298 | Soybean | cytosol, nucleus | 6.38 | 31.31 |
| KRH13261 | Soybean | cytosol | 7.82 | 30.65 |
| KRG95365 | Soybean | nucleus | 20.78 | 30.06 |
| KRH67043 | Soybean | nucleus | 20.58 | 29.41 |
| EES10068 | Sorghum | nucleus | 25.1 | 28.31 |
| KRH07772 | Soybean | cytosol | 5.14 | 25.51 |
| HORVU2Hr1G116230.1 | Barley | nucleus | 20.58 | 24.63 |
| KRH56541 | Soybean | nucleus | 9.26 | 22.5 |
| KRH17717 | Soybean | nucleus | 16.26 | 22.44 |
| KRH62942 | Soybean | mitochondrion | 9.26 | 22.06 |
| KRH60871 | Soybean | nucleus, plastid | 12.76 | 21.68 |
| KRH51553 | Soybean | nucleus, plastid | 12.55 | 21.33 |
| KRH64318 | Soybean | nucleus | 11.11 | 21.01 |
| KRH53608 | Soybean | nucleus | 10.29 | 20.33 |
| KRH23771 | Soybean | nucleus | 11.32 | 20.22 |
| KRH40033 | Soybean | nucleus | 11.11 | 19.85 |
| KRG94084 | Soybean | nucleus | 15.02 | 19.52 |
| KRH07154 | Soybean | nucleus | 14.81 | 19.35 |
| KRH06384 | Soybean | nucleus | 11.93 | 19.27 |
| KRH47819 | Soybean | nucleus | 11.73 | 19.26 |
| KRH18921 | Soybean | nucleus | 10.7 | 18.84 |
| KRH06373 | Soybean | nucleus | 10.7 | 18.77 |
| KRH16743 | Soybean | nucleus | 10.49 | 18.61 |
| KRG93213 | Soybean | nucleus | 14.4 | 18.57 |
| KRH47808 | Soybean | nucleus | 10.91 | 18.53 |
| KRH62327 | Soybean | nucleus | 10.91 | 18.47 |
| KRH23293 | Soybean | nucleus | 12.96 | 17.85 |
| KRH06306 | Soybean | nucleus | 9.88 | 17.84 |
| KRH28467 | Soybean | cytosol | 13.37 | 17.81 |
| KRH53044 | Soybean | nucleus | 10.49 | 17.77 |
| KRH47731 | Soybean | nucleus | 9.67 | 17.6 |
| KRH77004 | Soybean | nucleus | 12.76 | 17.13 |
| KRH61448 | Soybean | nucleus | 13.17 | 16.67 |
| KRH52137 | Soybean | nucleus | 12.55 | 16.14 |
| KRH14284 | Soybean | nucleus | 15.84 | 16.11 |
| KRH46297 | Soybean | nucleus | 15.84 | 16.08 |
| KRH73860 | Soybean | nucleus | 15.43 | 15.72 |
| KRG98573 | Soybean | nucleus | 15.23 | 15.45 |
| KRH74025 | Soybean | nucleus | 15.02 | 15.37 |
| KRH14098 | Soybean | nucleus | 14.81 | 15.03 |
| KRG92276 | Soybean | endoplasmic reticulum | 14.2 | 14.5 |
| KRH34534 | Soybean | nucleus | 13.99 | 14.44 |
| KRH05541 | Soybean | cytosol, endoplasmic reticulum | 9.26 | 13.89 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | UniProt:A0A0R0KRZ3 | EMBL:ACUP02001998 | ncoils:Coil | EnsemblPlantsGene:GLYMA_03G118800 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 |
| EnsemblPlants:KRH66628 | ProteinID:KRH66628 | ProteinID:KRH66628.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR44578 | PANTHER:PTHR44578:SF2 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI0006ED8C66 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr3:-:32936215..32939566
Molecular Weight (calculated)
51824.2 Da
IEP (calculated)
4.654
GRAVY (calculated)
-0.699
Length
486 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRKRKVAPK SSLSTEPPLK QQQPKPENPP QEYEEVEEEV EEEEVEEEVE EEEEEEEEDE EEEEEEEEEE EENDVVKQQQ QQQQDEDDIP ISKLLEPLGK
101: DQLLNLLCDA AAKHRDVEER IRKAADGDPV HRKIFVHGLG WDTTAGTLIS AFRQYGEIED CKAVTDKVSG KSKGYGFILF KTRRGAQNAL KEPQKKIGNR
201: MTACQLASIG PVSNPPPTPM APSAAPSSSV SEYTQKKIYV SNVGADLDPQ KLLAFFSRFG EIEEGPLGLD KATGKPKGFC LFVYRNPESA RRALEEPHKD
301: FEGHILHCQK AIDGPKAGKF QQQQQHGNVN AHAQRAQFQR NSNVGANAAA GYGGGGSAVQ PGHLMAPAGP GIGFNPSAAA AAQAALNPAM AQALTALLAS
401: QGTLGLTNLL GSIGTSAAVN PGVPAAGSAV QGGGYSAQPN ISPGVVGGYG NQVGLQAAYP NQNQQIGQGG SGRGQYGGGA APYMGH
101: DQLLNLLCDA AAKHRDVEER IRKAADGDPV HRKIFVHGLG WDTTAGTLIS AFRQYGEIED CKAVTDKVSG KSKGYGFILF KTRRGAQNAL KEPQKKIGNR
201: MTACQLASIG PVSNPPPTPM APSAAPSSSV SEYTQKKIYV SNVGADLDPQ KLLAFFSRFG EIEEGPLGLD KATGKPKGFC LFVYRNPESA RRALEEPHKD
301: FEGHILHCQK AIDGPKAGKF QQQQQHGNVN AHAQRAQFQR NSNVGANAAA GYGGGGSAVQ PGHLMAPAGP GIGFNPSAAA AAQAALNPAM AQALTALLAS
401: QGTLGLTNLL GSIGTSAAVN PGVPAAGSAV QGGGYSAQPN ISPGVVGGYG NQVGLQAAYP NQNQQIGQGG SGRGQYGGGA APYMGH
001: MTKKRKLEGE ESNEAEEPSQ KLKQTPEEEQ QLVIKNQDNQ GDVEEVEYEE VEEEQEEEVE DDDDEDDGDE NEDQTDGNRI EAAATSGSGN QEDDDDEPIQ
101: DLLEPFSKEQ VLSLLKEAAE KHVDVANRIR EVADEDPVHR KIFVHGLGWD TKTETLIEAF KQYGEIEDCK AVFDKISGKS KGYGFILYKS RSGARNALKQ
201: PQKKIGSRMT ACQLASKGPV FGGAPIAAAA VSAPAQHSNS EHTQKKIYVS NVGAELDPQK LLMFFSKFGE IEEGPLGLDK YTGRPKGFCL FVYKSSESAK
301: RALEEPHKTF EGHILHCQKA IDGPKPGKQQ QHHHNPHAYN NPRYQRNDNN GYGPPGGHGH LMAGNPAGMG GPTAQVINPA IGQALTALLA SQGAGLAFNP
401: AIGQALLGSL GTAAGVNPGN GVGMPTGYGT QAMAPGTMPG YGTQPGLQGG YQTPQPGQGG TSRGQHGVGP YGTPYMGH
101: DLLEPFSKEQ VLSLLKEAAE KHVDVANRIR EVADEDPVHR KIFVHGLGWD TKTETLIEAF KQYGEIEDCK AVFDKISGKS KGYGFILYKS RSGARNALKQ
201: PQKKIGSRMT ACQLASKGPV FGGAPIAAAA VSAPAQHSNS EHTQKKIYVS NVGAELDPQK LLMFFSKFGE IEEGPLGLDK YTGRPKGFCL FVYKSSESAK
301: RALEEPHKTF EGHILHCQKA IDGPKPGKQQ QHHHNPHAYN NPRYQRNDNN GYGPPGGHGH LMAGNPAGMG GPTAQVINPA IGQALTALLA SQGAGLAFNP
401: AIGQALLGSL GTAAGVNPGN GVGMPTGYGT QAMAPGTMPG YGTQPGLQGG YQTPQPGQGG TSRGQHGVGP YGTPYMGH
Arabidopsis Description
UBA2AUBP1-associated protein 2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LES2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.