CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 4
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95052
KRH33128
KRH33305
KRH66702
KRH71688

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G33470.1	KRG95052	AT3G56680.1	21798944
AT1G33470.1	KRH33128	AT3G56680.1	21798944
AT1G33470.1	KRH33305	AT3G56680.1	21798944
AT1G33470.1	KRH66702	AT3G56680.1	21798944
AT1G33470.1	KRH71688	AT3G56680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75298	Soybean	cytosol, nucleus	38.24	78.79
KRH13261	Soybean	cytosol	45.59	75.0
KRH23771	Soybean	nucleus	50.0	37.5
KRH40033	Soybean	nucleus	50.0	37.5
CDY69197	Canola	nucleus	40.69	36.89
VIT_18s0089g00920.t01	Wine grape	nucleus	48.53	36.8
Solyc11g044470.1.1	Tomato	mitochondrion, nucleus, plastid	45.59	35.63
PGSC0003DMT400008944	Potato	nucleus	46.08	35.61
EES01849	Sorghum	nucleus	45.59	35.5
CDY04769	Canola	nucleus	40.69	35.02
Bra024547.1-P	Field mustard	nucleus	40.69	34.73
GSMUA_Achr10P...	Banana	nucleus	46.08	34.69
GSMUA_Achr6P17510_001	Banana	cytosol, mitochondrion, nucleus	45.59	34.44
GSMUA_Achr8P08440_001	Banana	nucleus	42.65	33.59
Bra012350.1-P	Field mustard	nucleus	40.69	33.33
CDY25759	Canola	nucleus	40.69	33.33
GSMUA_Achr3P21850_001	Banana	nucleus	41.67	32.44
AT1G33470.1	Thale cress	cytosol	38.24	31.84
CDX73279	Canola	cytosol	37.75	31.82
Zm00001d042641_P001	Maize	nucleus	45.59	31.53
KRH51553	Soybean	nucleus, plastid	43.63	31.12
KRH60871	Soybean	nucleus, plastid	43.63	31.12
Os01t0876800-00	Rice	nucleus	45.59	31.0
TraesCS3D01G380100.1	Wheat	nucleus	44.61	30.74
TraesCS3B01G419200.1	Wheat	nucleus	44.61	30.74
TraesCS3A01G389600.1	Wheat	nucleus	44.61	30.64
KRH16743	Soybean	nucleus	40.2	29.93
KRH18921	Soybean	nucleus	39.71	29.35
Os01t0958500-01	Rice	nucleus	43.63	28.71
KRH53608	Soybean	nucleus	33.82	28.05
KRH62327	Soybean	nucleus	39.22	27.87
KRH53044	Soybean	nucleus	39.22	27.87
KRH47819	Soybean	nucleus	39.71	27.36
KRH06384	Soybean	nucleus	40.2	27.24
KRH64318	Soybean	nucleus	34.31	27.24
Zm00001d012238_P003	Maize	nucleus, plasma membrane, plastid	45.1	27.06
KRH06373	Soybean	nucleus	36.27	26.71
KRH47808	Soybean	nucleus	36.27	25.87
Bra010203.1-P	Field mustard	nucleus	38.24	25.57
TraesCS3A01G499100.1	Wheat	cytosol, nucleus, plastid	38.73	25.32
CDY67263	Canola	nucleus	40.69	25.3
EES02078	Sorghum	nucleus	41.67	25.15
KRH47731	Soybean	nucleus	32.84	25.09
TraesCS3B01G562300.3	Wheat	mitochondrion	38.24	25.0
HORVU3Hr1G110370.1	Barley	cytosol, mitochondrion, nucleus	38.24	24.92
KRH06306	Soybean	nucleus	32.84	24.91
TraesCS3D01G505900.1	Wheat	mitochondrion	38.24	24.68
KRH07772	Soybean	cytosol	11.76	24.49
AT1G22910.3	Thale cress	nucleus	41.18	24.21
Zm00001d042042_P001	Maize	nucleus	39.71	23.82
KRH56541	Soybean	nucleus	15.69	16.0
GSMUA_Achr6P24180_001	Banana	cytosol	42.65	13.04
KRH67043	Soybean	nucleus	21.57	12.94
KRG95365	Soybean	nucleus	21.08	12.8
KRH71299	Soybean	nucleus	24.02	12.76
KRH50169	Soybean	nucleus	23.53	12.5
KRH17717	Soybean	nucleus	20.1	11.65
KRH23293	Soybean	nucleus	18.63	10.76
KRH26210	Soybean	nucleus	21.57	10.07
KRH07154	Soybean	nucleus	18.14	9.95
KRH55109	Soybean	nucleus	21.57	9.91
KRG94084	Soybean	nucleus	18.14	9.89
KRH14284	Soybean	nucleus	22.06	9.41
KRG94993	Soybean	nucleus	22.06	9.39
KRG93213	Soybean	nucleus	17.16	9.28
KRH66628	Soybean	nucleus	22.06	9.26
KRH73860	Soybean	nucleus	21.57	9.22
KRH52137	Soybean	nucleus	16.18	8.73
KRH61448	Soybean	nucleus	16.18	8.59
KRH46297	Soybean	nucleus	19.61	8.35
KRG98573	Soybean	nucleus	19.61	8.35
KRH28467	Soybean	cytosol	14.71	8.22
KRH73477	Soybean	nucleus	19.61	8.06
KRH77004	Soybean	nucleus	14.22	8.01
KRH14673	Soybean	nucleus	19.12	7.89
CDY13339	Canola	mitochondrion	6.37	7.74
KRH34534	Soybean	nucleus	17.65	7.64
KRH74025	Soybean	nucleus	17.65	7.58
KRG92276	Soybean	endoplasmic reticulum	17.65	7.56
KRH14098	Soybean	nucleus	17.65	7.52
KRH05541	Soybean	cytosol, endoplasmic reticulum	9.8	6.17
CDY21399	Canola	mitochondrion	3.43	4.83

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EMBL:ACUP02002438	EnsemblPlantsGene:GLYMA_04G143100	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:K7MS70	EnsemblPlants:KRH62942
ProteinID:KRH62942	ProteinID:KRH62942.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44374
PANTHER:PTHR44374:SF4	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000295FD3E

Description

hypothetical protein

Coordinates

chr4:+:25755954..25758051

Molecular Weight (calculated)

22346.7 Da

IEP (calculated)

9.383

GRAVY (calculated)

-0.343

Length

204 amino acids

Sequence
(BLAST)

001: MFKCPKTVNP VRQETSRLRS SIQQDGGSVF LIGSTIFKIT PVNLAGQFGD TTFTKVFVGG LASETQKETM KKYFEQFGEI LEAAVITDKA TGRSKGYGFV
101: TFHEPEAAMR ACVDPAPIID DGKANCNLAS LGVQRSKPST PKHVFIRTNY DGNINMLQRE VSTKSTYTEA QSYNEDMKLT SNSTPTMAAR LSYSMVAAMG
201: LRSP

Best Arabidopsis Sequence Match ( AT1G22910.1 )
(BLAST)

001: MAGGIGLGDT TYTKVFVGGL AWETHKETMK KHFEQFGEIL EAVVITDKAS GRSKGYGFVT FREAEAARSA CVDATPVIDG RRANCNLASL GLQRSKPSTP
101: NHGGGGRINN MRVMMSTMQT GFGPPPPPQP PTFTHYPHLP LNLFGYSPYS PDYSSFPTNL YGMYGCTSGG QYGVYGNRNS GGGGLTAAAA SATPFYPCGG
201: GHGGVQFSQP QPFYHHLSSY NPHHYSPPTF SMQQGVTGFP LQPPLIPYR

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I321]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.