Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G33470.1 | KRG95052 | AT3G56680.1 | 21798944 |
| AT1G33470.1 | KRH33128 | AT3G56680.1 | 21798944 |
| AT1G33470.1 | KRH33305 | AT3G56680.1 | 21798944 |
| AT1G33470.1 | KRH66702 | AT3G56680.1 | 21798944 |
| AT1G33470.1 | KRH71688 | AT3G56680.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH40033 | Soybean | nucleus | 94.85 | 94.85 |
| KRH13261 | Soybean | cytosol | 40.07 | 87.9 |
| KRH75298 | Soybean | cytosol, nucleus | 31.62 | 86.87 |
| VIT_18s0089g00920.t01 | Wine grape | nucleus | 85.29 | 86.25 |
| PGSC0003DMT400008944 | Potato | nucleus | 75.74 | 78.03 |
| Solyc11g044470.1.1 | Tomato | mitochondrion, nucleus, plastid | 72.06 | 75.1 |
| GSMUA_Achr10P... | Banana | nucleus | 68.75 | 69.0 |
| EES01849 | Sorghum | nucleus | 65.81 | 68.32 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 65.44 | 67.94 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 63.6 | 66.8 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 65.07 | 65.56 |
| Os01t0876800-00 | Rice | nucleus | 69.49 | 63.0 |
| Zm00001d042641_P001 | Maize | nucleus | 68.01 | 62.71 |
| TraesCS3B01G419200.1 | Wheat | nucleus | 67.65 | 62.16 |
| TraesCS3D01G380100.1 | Wheat | nucleus | 67.28 | 61.82 |
| TraesCS3A01G389600.1 | Wheat | nucleus | 67.28 | 61.62 |
| CDY69197 | Canola | nucleus | 45.96 | 55.56 |
| Bra024547.1-P | Field mustard | nucleus | 47.06 | 53.56 |
| CDY04769 | Canola | nucleus | 46.32 | 53.16 |
| CDX73279 | Canola | cytosol | 46.69 | 52.48 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 65.07 | 52.06 |
| AT1G33470.1 | Thale cress | cytosol | 46.32 | 51.43 |
| KRH62942 | Soybean | mitochondrion | 37.5 | 50.0 |
| Bra012350.1-P | Field mustard | nucleus | 45.22 | 49.4 |
| CDY25759 | Canola | nucleus | 44.85 | 49.0 |
| Os01t0958500-01 | Rice | nucleus | 50.0 | 43.87 |
| KRH47819 | Soybean | nucleus | 47.43 | 43.58 |
| KRH06384 | Soybean | nucleus | 48.16 | 43.52 |
| KRH51553 | Soybean | nucleus, plastid | 45.59 | 43.36 |
| KRH60871 | Soybean | nucleus, plastid | 45.22 | 43.01 |
| Bra010203.1-P | Field mustard | nucleus | 47.06 | 41.97 |
| TraesCS3A01G499100.1 | Wheat | cytosol, nucleus, plastid | 47.06 | 41.03 |
| HORVU3Hr1G110370.1 | Barley | cytosol, mitochondrion, nucleus | 47.06 | 40.89 |
| TraesCS3D01G505900.1 | Wheat | mitochondrion | 46.69 | 40.19 |
| TraesCS3B01G562300.3 | Wheat | mitochondrion | 45.96 | 40.06 |
| KRH06373 | Soybean | nucleus | 40.44 | 39.71 |
| EES02078 | Sorghum | nucleus | 49.26 | 39.65 |
| AT1G22910.3 | Thale cress | nucleus | 50.0 | 39.19 |
| KRH53608 | Soybean | nucleus | 35.29 | 39.02 |
| KRH16743 | Soybean | nucleus | 38.97 | 38.69 |
| Zm00001d042042_P001 | Maize | nucleus | 47.79 | 38.24 |
| KRH18921 | Soybean | nucleus | 38.6 | 38.04 |
| CDY67263 | Canola | nucleus | 45.59 | 37.8 |
| KRH47808 | Soybean | nucleus | 39.71 | 37.76 |
| KRH64318 | Soybean | nucleus | 35.66 | 37.74 |
| KRH62327 | Soybean | nucleus | 37.13 | 35.19 |
| KRH53044 | Soybean | nucleus | 37.13 | 35.19 |
| CDY13339 | Canola | mitochondrion | 21.69 | 35.12 |
| KRH47731 | Soybean | nucleus | 34.19 | 34.83 |
| KRH06306 | Soybean | nucleus | 33.82 | 34.2 |
| CDY21399 | Canola | mitochondrion | 16.18 | 30.34 |
| KRH07772 | Soybean | cytosol | 10.66 | 29.59 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 60.66 | 24.74 |
| KRH56541 | Soybean | nucleus | 13.24 | 18.0 |
| KRH17717 | Soybean | nucleus | 23.16 | 17.9 |
| KRH71299 | Soybean | nucleus | 25.0 | 17.71 |
| KRH50169 | Soybean | nucleus | 24.63 | 17.45 |
| KRG95365 | Soybean | nucleus | 20.96 | 16.96 |
| KRH67043 | Soybean | nucleus | 20.96 | 16.76 |
| KRH23293 | Soybean | nucleus | 21.32 | 16.43 |
| KRH07154 | Soybean | nucleus | 21.69 | 15.86 |
| KRG94084 | Soybean | nucleus | 21.69 | 15.78 |
| KRG93213 | Soybean | nucleus | 20.59 | 14.85 |
| KRH52137 | Soybean | nucleus | 20.59 | 14.81 |
| KRH26210 | Soybean | nucleus | 23.16 | 14.42 |
| KRH55109 | Soybean | nucleus | 23.53 | 14.41 |
| KRH46297 | Soybean | nucleus | 25.0 | 14.2 |
| KRG98573 | Soybean | nucleus | 25.0 | 14.2 |
| KRH61448 | Soybean | nucleus | 19.85 | 14.06 |
| KRH34534 | Soybean | nucleus | 24.26 | 14.01 |
| KRH28467 | Soybean | cytosol | 18.75 | 13.97 |
| KRG92276 | Soybean | endoplasmic reticulum | 24.26 | 13.87 |
| KRH73860 | Soybean | nucleus | 24.26 | 13.84 |
| KRH77004 | Soybean | nucleus | 18.38 | 13.81 |
| KRH14284 | Soybean | nucleus | 23.9 | 13.6 |
| KRH74025 | Soybean | nucleus | 22.79 | 13.05 |
| KRH14098 | Soybean | nucleus | 22.79 | 12.94 |
| KRG94993 | Soybean | nucleus | 20.22 | 11.48 |
| KRH66628 | Soybean | nucleus | 20.22 | 11.32 |
| KRH73477 | Soybean | nucleus | 19.85 | 10.89 |
| KRH05541 | Soybean | cytosol, endoplasmic reticulum | 12.87 | 10.8 |
| KRH14673 | Soybean | nucleus | 19.12 | 10.53 |
Protein Annotations
| EntrezGene:100779046 | Gene3D:3.30.70.330 | MapMan:35.1 | EMBL:ACUP02007160 | EnsemblPlantsGene:GLYMA_12G002800 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | UniProt:K7LS85 |
| EnsemblPlants:KRH23771 | ProteinID:KRH23771 | ProteinID:KRH23771.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR44374 | PANTHER:PTHR44374:SF4 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI00023CC436 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr12:-:224749..230327
Molecular Weight (calculated)
28562.5 Da
IEP (calculated)
8.993
GRAVY (calculated)
-0.276
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MTPVNLAGQF GDTTYTKVFV GGLAWETQKE TMKKYFEQFG EILEAVVITD KATGRSKGYG FVTFREPEAA MRACVDPAPV IDGRRANCNL ASLGVQRSKP
101: STPKHGGAGR NFRVMGSFQT GFGGGVGSAF PSAATFPHYA IQQGIPYNVY GYSPYSPDYT YPTSYYGVYG GATAQYPVYG SGPAAAAGGM MSGGAAFYPY
201: LQYGGEGSGG GGTSGQGYGV NYPPQAHLFQ YSPIASTAGY AQHYGTPTMS LAPSPALQSG VTMPLQAPIP HR
101: STPKHGGAGR NFRVMGSFQT GFGGGVGSAF PSAATFPHYA IQQGIPYNVY GYSPYSPDYT YPTSYYGVYG GATAQYPVYG SGPAAAAGGM MSGGAAFYPY
201: LQYGGEGSGG GGTSGQGYGV NYPPQAHLFQ YSPIASTAGY AQHYGTPTMS LAPSPALQSG VTMPLQAPIP HR
001: MEDTTFTKVF VGGLAWETHK VSLRNYFEQF GDIVEAVVIT DKSSGRSKGY GFVTFCDPEA AQKACVDPAP VIDGRRANCN LAAFGVQRSK PSSPIHGHVG
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TSYYNVYGGA TAQHPMYGSG PMTGVAAAPA AGFYPYLQFA EGNGPVTGYA
201: PLHYPNHMFH YSAPGGNYPH HNGSPVSLAP SPVIPSVCFA VPQA
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TSYYNVYGGA TAQHPMYGSG PMTGVAAAPA AGFYPYLQFA EGNGPVTGYA
201: PLHYPNHMFH YSAPGGNYPH HNGSPVSLAP SPVIPSVCFA VPQA
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q67YS0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.