CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56541	Soybean	nucleus	51.72	97.5
KRH07154	Soybean	nucleus	83.02	84.14
KRG94084	Soybean	nucleus	81.96	82.62
VIT_14s0066g00480.t01	Wine grape	nucleus	71.62	71.81
Solyc02g093340.2.1	Tomato	nucleus	64.19	62.21
PGSC0003DMT400032811	Potato	nucleus	63.93	61.95
KRH17717	Soybean	nucleus	54.64	58.52
AT5G40490.1	Thale cress	nucleus	64.72	57.68
CDY36357	Canola	nucleus	63.66	44.28
Bra025568.1-P	Field mustard	nucleus	63.66	44.04
CDY42577	Canola	nucleus	63.4	43.85
KRH07772	Soybean	cytosol	10.34	39.8
KRH23293	Soybean	nucleus	37.14	39.66
KRG98573	Soybean	nucleus	35.54	27.97
KRG92276	Soybean	endoplasmic reticulum	35.28	27.94
KRH34534	Soybean	nucleus	34.48	27.6
KRH46297	Soybean	nucleus	35.01	27.56
KRH74025	Soybean	nucleus	34.22	27.16
KRH73860	Soybean	nucleus	33.95	26.83
KRH61448	Soybean	nucleus	27.32	26.82
KRH13261	Soybean	cytosol	8.75	26.61
KRH14284	Soybean	nucleus	33.69	26.57
KRH52137	Soybean	nucleus	26.53	26.45
KRH14098	Soybean	nucleus	33.42	26.3
KRH28467	Soybean	cytosol	22.81	23.56
KRH77004	Soybean	nucleus	22.55	23.48
KRH75298	Soybean	cytosol, nucleus	6.1	23.23
KRH05541	Soybean	cytosol, endoplasmic reticulum	18.3	21.3
KRH23771	Soybean	nucleus	14.85	20.59
KRH40033	Soybean	nucleus	14.59	20.22
KRH18921	Soybean	nucleus	14.32	19.57
KRH47731	Soybean	nucleus	13.79	19.48
KRG95365	Soybean	nucleus	17.24	19.35
KRH16743	Soybean	nucleus	14.06	19.34
KRH51553	Soybean	nucleus, plastid	14.32	18.88
KRH60871	Soybean	nucleus, plastid	14.32	18.88
KRH67043	Soybean	nucleus	16.98	18.82
KRH06306	Soybean	nucleus	13.26	18.59
KRH50169	Soybean	nucleus	18.83	18.49
KRH26210	Soybean	nucleus	21.22	18.31
KRH55109	Soybean	nucleus	21.22	18.02
KRH71299	Soybean	nucleus	18.04	17.71
KRH64318	Soybean	nucleus	11.94	17.51
KRH62942	Soybean	mitochondrion	9.28	17.16
KRH53608	Soybean	nucleus	11.14	17.07
KRH62327	Soybean	nucleus	12.73	16.72
KRH53044	Soybean	nucleus	12.2	16.03
KRH06384	Soybean	nucleus	12.2	15.28
KRH47819	Soybean	nucleus	11.94	15.2
KRH06373	Soybean	nucleus	11.14	15.16
KRG94993	Soybean	nucleus	19.1	15.03
KRH14673	Soybean	nucleus	19.63	14.98
KRH73477	Soybean	nucleus	19.63	14.92
KRH66628	Soybean	nucleus	18.57	14.4
KRH47808	Soybean	nucleus	10.88	14.34

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EMBL:ACUP02011541	EnsemblPlantsGene:GLYMA_19G003900	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	UniProt:I1N5J6	InterPro:IPR000504	InterPro:IPR012677	EnsemblPlants:KRG93213
ProteinID:KRG93213	ProteinID:KRG93213.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45276
PANTHER:PTHR45276:SF2	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000233EEB6
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:295914..299776

Molecular Weight (calculated)

39308.1 Da

IEP (calculated)

7.867

GRAVY (calculated)

-0.660

Length

377 amino acids

Sequence
(BLAST)

001: MESPGNEHVV GGAEPNDVVT PFSHREEPHN SQPLTGDGAS PGKIFIGGLA RETTIAQFIK HFGKYGEITD SVIMKDRKTG QPRGFGFITY ADPSVVDKVI
101: EEPHVINGKQ VEIKRTIPRG AVGSKDFRTK KIFVGGIPSN VTEDEFRDFF TRYGEVKDHQ IMRDHSTNRS RGFGFITFES EEAVDDLLSM GNKIDFAGAQ
201: VEIKKAEPKK PNSAPPSSKR YNDSRSSYSS GGYGDAYDGF GGSFGMGGGY RSGGAYGGGR GSGAYGGYAS EFGGYGGYAG AMGPYRGDPS LGYAGRYGGS
301: FSRGYDLGGY GGPSENYGAY GAGGGSSGGA GAGAGAGAYQ SGYDGNLGGG YGGASGGPFY GSTRGGYSAG RYHPYGR

Best Arabidopsis Sequence Match ( AT5G40490.1 )
(BLAST)

001: MDPYGTETVI EDEIHDPKPS EDIEDDDDKS QPHSGGGVDS AGKIFVGGLA RETTSAEFLK HFGKYGEITD SVIMKDRKTG QPRGFGFVTY ADSSVVDKVI
101: QDNHIIIGKQ VEIKRTIPRG SMSSNDFKTK KIFVGGIPSS VDDDEFKEFF MQFGELKEHQ IMRDHSTGRS RGFGFVTYES EDMVDHLLAK GNRIELSGTQ
201: VEIKKAEPKK PNSVTTPSKR FGDSRSNFGG GYGDGYGGGH GGGYGGPGGP YKSGGGYGGG RSGGYGGYGG EFGGYGGGGY GGGVGPYRGE PALGYSGRYG
301: GGGGGYNRGG YSMGGGGGYG GGPGDMYGGS YGEPGGGYGG PSGSYGGGYG SSGIGGYGGG MGGAGGGGYR GGGGYDMGGV GGGGAGGYGA GGGGNGGGSF
401: YGGGGGRGGY GGGGSGRYHP YGR

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9FM47]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.