Factsheet for Bra025568.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42577	Canola	nucleus	99.08	99.08
CDY36357	Canola	nucleus	98.17	98.71
AT5G40490.1	Thale cress	nucleus	68.62	88.42
VIT_14s0066g00480.t01	Wine grape	nucleus	46.79	67.82
KRH07154	Soybean	nucleus	45.5	66.67
KRG94084	Soybean	nucleus	44.95	65.51
KRH56541	Soybean	nucleus	23.85	65.0
KRG93213	Soybean	nucleus	44.04	63.66
Solyc02g093340.2.1	Tomato	nucleus	43.67	61.18
PGSC0003DMT400032811	Potato	nucleus	43.12	60.41
Bra039380.1-P	Field mustard	nucleus	37.25	56.08
Bra035441.1-P	Field mustard	mitochondrion, nucleus, plastid	6.06	42.31
Bra010757.1-P	Field mustard	nucleus	23.3	33.25
Bra021850.1-P	Field mustard	nucleus	22.02	32.7
Bra005496.1-P	Field mustard	nucleus	22.02	31.91
Bra022938.1-P	Field mustard	nucleus	23.67	31.62
Bra001267.1-P	Field mustard	nucleus	25.87	29.94
Bra024928.1-P	Field mustard	nucleus	22.94	29.76
Bra040031.1-P	Field mustard	nucleus	26.42	29.63
Bra017475.1-P	Field mustard	nucleus	22.94	29.27
Bra029681.1-P	Field mustard	nucleus	26.24	28.54
Bra021062.1-P	Field mustard	nucleus	20.18	28.06
Bra022145.1-P	Field mustard	nucleus	23.3	27.61
Bra028973.1-P	Field mustard	nucleus	20.55	25.87
Bra027860.1-P	Field mustard	cytosol, nucleus, peroxisome	17.25	25.82
Bra026413.1-P	Field mustard	nucleus	19.82	25.53
Bra019094.1-P	Field mustard	nucleus	20.92	24.62
Bra012254.1-P	Field mustard	nucleus	9.91	22.41
Bra016445.1-P	Field mustard	nucleus	10.46	22.09
Bra039664.1-P	Field mustard	nucleus	16.7	21.93
Bra038113.1-P	Field mustard	nucleus	16.33	21.5
Bra025852.1-P	Field mustard	nucleus	10.28	21.46
Bra007096.1-P	Field mustard	nucleus	9.91	20.85
Bra017802.1-P	Field mustard	nucleus	15.6	20.83
Bra024547.1-P	Field mustard	nucleus	8.81	20.08
Bra012350.1-P	Field mustard	nucleus	8.99	19.68
Bra016954.1-P	Field mustard	nucleus	15.78	19.55
Bra014667.1-P	Field mustard	nucleus	10.83	19.34
Bra007277.1-P	Field mustard	nucleus	15.78	19.15
Bra003651.1-P	Field mustard	nucleus	8.81	17.71
Bra010203.1-P	Field mustard	nucleus	9.91	17.7
Bra015741.1-P	Field mustard	nucleus, plastid, vacuole	9.36	16.35
Bra004508.1-P	Field mustard	nucleus	9.36	16.35
Bra012321.1-P	Field mustard	nucleus	8.44	15.92
Bra031230.1-P	Field mustard	nucleus	8.81	15.64
Bra040485.1-P	Field mustard	nucleus	9.17	15.34
Bra031385.1-P	Field mustard	nucleus	8.07	15.17
Bra030265.1-P	Field mustard	nucleus	9.72	14.48
Bra029612.1-P	Field mustard	nucleus	6.42	12.2
Bra001228.1-P	Field mustard	cytosol	7.89	11.88

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EnsemblPlantsGene:Bra025568	EnsemblPlants:Bra025568.1	EnsemblPlants:Bra025568.1-P	GO:GO:0000003
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003730	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139
GO:GO:0006378	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009791
GO:GO:0009987	GO:GO:0048576	GO:GO:0048578	GO:GO:0097157	InterPro:IPR000504	InterPro:IPR012677
UniProt:M4E9W2	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PRINTS:PR01228	PFscan:PS50102	PANTHER:PTHR45276
PANTHER:PTHR45276:SF2	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002544ED3
SEG:seg	:	:	:	:	:

Description

AT5G40490 (E=3e-116) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA04:+:7809523..7812566

Molecular Weight (calculated)

56582.7 Da

IEP (calculated)

8.418

GRAVY (calculated)

-0.708

Length

545 amino acids

Sequence
(BLAST)

001: MDPYATEAVV DEENHEVKPS EDVEDDDDKS QPQSGGGIDS AGKIFVGGLA RETTSAEFVK HFEKYGEITD SVIMKDRKTG QPRGFGFVTY ADSSVVDKLI
101: QDNHIINGKQ VEIKRTIPRG SMSSSNEIKT KKIFVGGIPS TVDDDEFKEF FMQFGELKEH QIMRDHATGR SRGFGFVTYE SEEMVDLLLA KGNRIELSGT
201: QVEIKKAEPK KPNSVTTPSR RFGDSRSNFG GGYGDGYGGG PGGGYGGPDG PYKSGGGYGG GRSGGYGGYG GEFGGYGGGG YGGGVGPYRG GEPPLGYSGR
301: YGGGGGGGYN RGGYGMGGGG GGGGYGGGPG DMYGGPYGEP AGGYGGPSGS YGSGYGSGGY GGGGYRGSSG GYDMGGTGVG GGGGYPSGGG GASGGGSFYG
401: GGGGGGGSRG GYGGGSGRYH PYGRIRHLEM ATLASNIVCI GKVERRRRLK IDCRKKEKGR DQSISPYKVI EITPPPKSLG VRCLPHNLQC GENVMIEGQT
501: YTISAVTHRY QLRKGKYEPS ERRLDVLSAA RYVLNLYFDN LLQNS

Best Arabidopsis Sequence Match ( AT5G40490.1 )
(BLAST)

001: MDPYGTETVI EDEIHDPKPS EDIEDDDDKS QPHSGGGVDS AGKIFVGGLA RETTSAEFLK HFGKYGEITD SVIMKDRKTG QPRGFGFVTY ADSSVVDKVI
101: QDNHIIIGKQ VEIKRTIPRG SMSSNDFKTK KIFVGGIPSS VDDDEFKEFF MQFGELKEHQ IMRDHSTGRS RGFGFVTYES EDMVDHLLAK GNRIELSGTQ
201: VEIKKAEPKK PNSVTTPSKR FGDSRSNFGG GYGDGYGGGH GGGYGGPGGP YKSGGGYGGG RSGGYGGYGG EFGGYGGGGY GGGVGPYRGE PALGYSGRYG
301: GGGGGYNRGG YSMGGGGGYG GGPGDMYGGS YGEPGGGYGG PSGSYGGGYG SSGIGGYGGG MGGAGGGGYR GGGGYDMGGV GGGGAGGYGA GGGGNGGGSF
401: YGGGGGRGGY GGGGSGRYHP YGR

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9FM47]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.