Factsheet for Bra016445.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012964.1-P
Bra035933.1-P
Bra038436.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20880.1	Bra038436.1-P	AT1G31750.1	21798944
AT1G20880.1	Bra012964.1-P	AT5G61380.1	21798944
AT1G20880.1	Bra035933.1-P	AT5G61380.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96615	Canola	nucleus	96.9	99.21
Bra025852.1-P	Field mustard	nucleus	88.76	87.74
Bra012254.1-P	Field mustard	nucleus	79.07	84.65
AT1G20880.1	Thale cress	nucleus	81.01	76.28
KRH51553	Soybean	nucleus, plastid	69.38	62.59
KRH60871	Soybean	nucleus, plastid	68.99	62.24
VIT_18s0122g00660.t01	Wine grape	nucleus, plastid	67.05	60.7
Bra015741.1-P	Field mustard	nucleus, plastid, vacuole	62.79	51.92
Solyc02g082270.2.1	Tomato	nucleus	51.16	46.81
PGSC0003DMT400035478	Potato	nucleus, plastid	50.0	45.74
Bra024547.1-P	Field mustard	nucleus	36.82	39.75
Bra012350.1-P	Field mustard	nucleus	37.21	38.55
Bra035441.1-P	Field mustard	mitochondrion, nucleus, plastid	11.24	37.18
Bra007096.1-P	Field mustard	nucleus	36.05	35.91
Bra031385.1-P	Field mustard	nucleus	38.76	34.48
Bra012321.1-P	Field mustard	nucleus	38.37	34.26
Bra003651.1-P	Field mustard	nucleus	35.27	33.58
Bra010203.1-P	Field mustard	nucleus	38.76	32.79
Bra004508.1-P	Field mustard	nucleus	39.15	32.37
Bra040485.1-P	Field mustard	nucleus	38.76	30.67
Bra029612.1-P	Field mustard	nucleus	20.54	18.47
Bra039664.1-P	Field mustard	nucleus	27.91	17.35
Bra038113.1-P	Field mustard	nucleus	27.52	17.15
Bra031230.1-P	Field mustard	nucleus	19.77	16.61
Bra010757.1-P	Field mustard	nucleus	22.48	15.18
Bra021850.1-P	Field mustard	nucleus	20.54	14.44
Bra005496.1-P	Field mustard	nucleus	20.16	13.83
Bra039380.1-P	Field mustard	nucleus	19.38	13.81
Bra001228.1-P	Field mustard	cytosol	19.38	13.81
Bra022938.1-P	Field mustard	nucleus	21.71	13.73
Bra016954.1-P	Field mustard	nucleus	22.48	13.18
Bra007277.1-P	Field mustard	nucleus	22.48	12.92
Bra014667.1-P	Field mustard	nucleus	15.12	12.79
Bra024928.1-P	Field mustard	nucleus	20.16	12.38
Bra017475.1-P	Field mustard	nucleus	20.16	12.18
Bra021062.1-P	Field mustard	nucleus	18.22	11.99
Bra030265.1-P	Field mustard	nucleus	16.67	11.75
Bra027860.1-P	Field mustard	cytosol, nucleus, peroxisome	16.28	11.54
Bra022145.1-P	Field mustard	nucleus	20.16	11.3
Bra001267.1-P	Field mustard	nucleus	20.54	11.25
Bra040031.1-P	Field mustard	nucleus	20.54	10.91
Bra017802.1-P	Field mustard	nucleus	17.05	10.78
Bra025568.1-P	Field mustard	nucleus	22.09	10.46
Bra029681.1-P	Field mustard	nucleus	20.16	10.38
Bra028973.1-P	Field mustard	nucleus	16.67	9.93
Bra026413.1-P	Field mustard	nucleus	15.89	9.69
Bra019094.1-P	Field mustard	nucleus	17.05	9.5

Protein Annotations

EnsemblPlants:Bra016445.1	EnsemblPlants:Bra016445.1-P	EnsemblPlantsGene:Bra016445	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44828	PANTHER:PTHR44828:SF1	PFAM:PF00076	PFscan:PS50102	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000254698B	UniProt:M4DIW8	MapMan:35.1	:	:

Description

AT1G20880 (E=1e-106) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA08:+:18512856..18514443

Molecular Weight (calculated)

28057.6 Da

IEP (calculated)

8.981

GRAVY (calculated)

-0.528

Length

258 amino acids

Sequence
(BLAST)

001: MAYHSIQGYL NSPFGDTTTF TKVFVGGLAW ETQSHTLRRH FEPYGDILEA VVITDKNTAR SKGYGFVTFR DPEAARRACV DPTPIIDGRR ANCNLASLGR
101: PPRLPTQYAV TPFIPGRIRP ASPYVGSVQG SRGSLFGSHP YQQPHAYSYQ QGVMYPYGAT TPYGPEYMYS QSQGLYGPYT GQQYLQVYGV PGGVNSPGYQ
201: YGQLSQNISV GHGYTAVQGY SVPGSHIQSP YPSAVAGPSP TQSYPQYMQS SGSDQTTG

Best Arabidopsis Sequence Match ( AT1G76460.1 )
(BLAST)

001: MAYQPVPGSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RQHFEQYGEI LEAVVIADKN TGRSKGYGFV TFRDPEAARR ACADPTPIID GRRANCNLAS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I2E4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.