Factsheet for Bra028973.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36753	Canola	nucleus	97.92	97.47
AT5G55550.10	Thale cress	nucleus	84.53	72.19
Bra019094.1-P	Field mustard	nucleus	73.67	68.9
Bra026413.1-P	Field mustard	nucleus	65.59	67.14
VIT_19s0090g01660.t01	Wine grape	nucleus	58.43	52.93
KRH14284	Soybean	nucleus	57.74	52.3
KRH73860	Soybean	nucleus	57.51	52.2
PGSC0003DMT400037271	Potato	nucleus	56.35	51.91
PGSC0003DMT400076643	Potato	nucleus	56.35	51.48
KRH46297	Soybean	nucleus	56.58	51.15
KRG98573	Soybean	nucleus	56.35	50.94
GSMUA_Achr10P...	Banana	nucleus	50.58	49.77
Solyc10g006050.2.1	Tomato	nucleus	49.65	49.65
GSMUA_Achr10P...	Banana	nucleus	51.73	48.7
Solyc12g014600.1.1	Tomato	nucleus	48.73	48.28
GSMUA_Achr4P33100_001	Banana	nucleus	48.5	47.51
TraesCS4A01G150600.1	Wheat	nucleus	49.88	46.65
TraesCS4D01G152200.1	Wheat	nucleus	49.88	46.65
HORVU0Hr1G008280.1	Barley	nucleus	49.88	46.65
TraesCSU01G068500.1	Wheat	nucleus	49.65	46.44
GSMUA_Achr6P10970_001	Banana	nucleus	53.35	46.2
Os11t0637700-01	Rice	plasma membrane	49.42	45.82
Bra001267.1-P	Field mustard	nucleus	49.19	45.22
Zm00001d007772_P001	Maize	nucleus	46.42	44.77
Bra017475.1-P	Field mustard	nucleus	43.65	44.26
TraesCS2D01G197500.2	Wheat	nucleus	47.81	44.04
Zm00001d019079_P001	Maize	cytosol	45.5	43.97
TraesCS2B01G216600.2	Wheat	cytosol	47.81	43.95
Bra040031.1-P	Field mustard	nucleus	49.19	43.83
Bra024928.1-P	Field mustard	nucleus	42.49	43.81
Os07t0584500-01	Rice	nucleus	47.58	43.64
EER98147	Sorghum	nucleus	45.27	43.27
EER97452	Sorghum	nucleus	46.88	43.1
EER96020	Sorghum	nucleus	45.27	43.08
Zm00001d019084_P002	Maize	nucleus	44.8	42.73
Bra029681.1-P	Field mustard	nucleus	49.42	42.71
Zm00001d006704_P002	Maize	nucleus	47.11	42.15
Bra021062.1-P	Field mustard	nucleus	37.41	41.33
Bra035441.1-P	Field mustard	mitochondrion, nucleus, plastid	7.39	41.03
Bra022145.1-P	Field mustard	nucleus	41.8	39.35
TraesCS2A01G190400.1	Wheat	plastid	47.34	38.61
Bra005496.1-P	Field mustard	nucleus	33.03	38.03
Bra021850.1-P	Field mustard	nucleus	32.1	37.87
Zm00001d021950_P007	Maize	endoplasmic reticulum, nucleus	47.11	37.71
Zm00001d019086_P001	Maize	nucleus	45.96	37.41
OQU83904	Sorghum	nucleus	37.88	36.44
Bra022938.1-P	Field mustard	nucleus	33.95	36.03
Bra010757.1-P	Field mustard	nucleus	30.95	35.08
GSMUA_Achr3P02300_001	Banana	nucleus	51.27	32.7
Bra039380.1-P	Field mustard	nucleus	24.48	29.28
Bra027860.1-P	Field mustard	cytosol, nucleus, peroxisome	23.56	28.02
Bra025568.1-P	Field mustard	nucleus	25.87	20.55
Bra017802.1-P	Field mustard	nucleus	18.94	20.1
Bra024547.1-P	Field mustard	nucleus	10.85	19.67
Bra007096.1-P	Field mustard	nucleus	10.85	18.15
Bra012350.1-P	Field mustard	nucleus	10.39	18.07
Bra016445.1-P	Field mustard	nucleus	9.93	16.67
Bra012254.1-P	Field mustard	nucleus	9.24	16.6
Bra010203.1-P	Field mustard	nucleus	11.55	16.39
Bra025852.1-P	Field mustard	nucleus	9.7	16.09
Bra004508.1-P	Field mustard	nucleus	11.32	15.71
Bra038113.1-P	Field mustard	nucleus	15.01	15.7
Bra039664.1-P	Field mustard	nucleus	14.78	15.42
Bra003651.1-P	Field mustard	nucleus	9.47	15.13
Bra040485.1-P	Field mustard	nucleus	11.09	14.72
Bra012321.1-P	Field mustard	nucleus	9.47	14.19
Bra031385.1-P	Field mustard	nucleus	9.47	14.14
Bra014667.1-P	Field mustard	nucleus	9.93	14.1
Bra007277.1-P	Field mustard	nucleus	14.32	13.81
Bra029612.1-P	Field mustard	nucleus	9.01	13.59
Bra016954.1-P	Field mustard	nucleus	13.39	13.18
Bra031230.1-P	Field mustard	nucleus	9.01	12.7
Bra001228.1-P	Field mustard	cytosol	10.39	12.43
Bra030265.1-P	Field mustard	nucleus	9.93	11.75
Bra015741.1-P	Field mustard	nucleus, plastid, vacuole	8.08	11.22

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EnsemblPlantsGene:Bra028973	EnsemblPlants:Bra028973.1	EnsemblPlants:Bra028973.1-P	InterPro:DAZAP1_RRM2
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
UniProt:M4EJK7	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44291	PANTHER:PTHR44291:SF1
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000253FE6F	SEG:seg

Description

AT5G55550 (E=2e-192) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA03:+:5672908..5674564

Molecular Weight (calculated)

47589.8 Da

IEP (calculated)

6.595

GRAVY (calculated)

-0.661

Length

433 amino acids

Sequence
(BLAST)

001: MESDLGKLFI GGISWDTDEE RLREYFTNYG DVVEAVIMRD RATGRARGFG FIVFADPNVA ERVILEKHII DGRTVEAKKA VPRDDHQQVM KRHTSPIHLM
101: SPLHGGGNRT KKIFVGGLPS SITETEFKSY FDQFGTIADV VVMYDHNTQR PRGFGFITFD SDDAVDRVLH KTFHELNGKL VEVKRAVPKE VSPVSNIRSP
201: LHGAGYGGIY GGGSNRMSVN NSYFNNFAPG SGYYNNLGGS VGGRFSPVIG SGRLNHELNL NLNPSYDGIT FNRFPNNPYF SNASPNRYTS PIGQNRTESH
301: YSSSNIDLWG NRTDNAGPGW NLNVSSGNNR GNWGLPSSAV GNDNNGYGRN FETGSGLSAS PFEGSIGNLY RGGSVYSDSM WRQQQQQLPP QSSQEIDAFS
401: YGYDIDNVGS DPSANDSEGY NVGNRQTNRG IEA

Best Arabidopsis Sequence Match ( AT5G55550.1 )
(BLAST)

001: MESDLGKLFI GGISWDTDEE RLRDYFSNYG DVVEAVIMRD RATGRARGFG FIVFADPCVS ERVIMDKHII DGRTVEAKKA VPRDDQQVLK RHASPIHLMS
101: PVHGGGGRTK KIFVGGLPSS ITEEEFKNYF DQFGTIADVV VMYDHNTQRP RGFGFITFDS DDAVDRVLHK TFHELNGKLV EVKRAVPKEI SPVSNIRSPL
201: ASGVNYGGGS NRMPANSYFN NFAPGPGFYN SLGPVGRRFS PVIGSGRNAV SAFGLGLNHD LSLNLNPSCD GTSSTFGYNR IPSNPYFNGA SPNRYTSPIG
301: HNRTESPYNS NNRDLWGNRT DTAGPGWNLN VSNGNNRGNW GLPSSSAVSN DNNGFGRNYG TSSGLSSSPF NGFEGSIGEL YRGGSVYSDS TWQQQQLPSQ
401: SSHELDNLSR AYGYDIDNVG SDPSANDPET YNGSYNVGNR QTNRGIAA

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT5G55550]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.