Factsheet for Solyc10g006050.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037271	Potato	nucleus	97.0	89.36
Solyc12g014600.1.1	Tomato	nucleus	79.21	78.49
Solyc04g014820.2.1	Tomato	cytosol	40.88	66.04
VIT_19s0090g01660.t01	Wine grape	nucleus	69.52	62.97
KRH46297	Soybean	nucleus	67.67	61.17
KRG98573	Soybean	nucleus	66.97	60.54
KRH73860	Soybean	nucleus	65.82	59.75
Solyc07g048030.2.1	Tomato	nucleus	59.35	58.81
KRH14284	Soybean	nucleus	64.9	58.79
GSMUA_Achr10P...	Banana	nucleus	58.89	57.95
Solyc11g012470.1.1	Tomato	nucleus	56.58	57.24
Solyc12g006180.1.1	Tomato	nucleus	57.51	56.85
GSMUA_Achr10P...	Banana	nucleus	59.58	56.09
GSMUA_Achr6P10970_001	Banana	nucleus	62.59	54.2
TraesCS4A01G150600.1	Wheat	nucleus	57.74	54.0
HORVU0Hr1G008280.1	Barley	nucleus	57.74	54.0
TraesCS4D01G152200.1	Wheat	nucleus	57.51	53.78
Os11t0637700-01	Rice	plasma membrane	57.74	53.53
TraesCSU01G068500.1	Wheat	nucleus	57.04	53.35
GSMUA_Achr4P33100_001	Banana	nucleus	54.27	53.17
AT4G26650.1	Thale cress	nucleus	52.89	50.33
EER97452	Sorghum	nucleus	54.73	50.32
Zm00001d007772_P001	Maize	nucleus	51.96	50.11
TraesCS2B01G216600.2	Wheat	cytosol	54.27	49.89
TraesCS2D01G197500.2	Wheat	nucleus	54.04	49.79
Bra028973.1-P	Field mustard	nucleus	49.65	49.65
EER98147	Sorghum	nucleus	51.73	49.45
Os07t0584500-01	Rice	nucleus	53.81	49.36
Zm00001d019079_P001	Maize	cytosol	51.04	49.33
EER96020	Sorghum	nucleus	51.73	49.23
CDY11989	Canola	nucleus	48.73	48.84
Zm00001d006704_P002	Maize	nucleus	54.27	48.55
CDY36753	Canola	nucleus	48.27	48.05
CDX92807	Canola	nucleus	49.88	48.0
CDX94301	Canola	nucleus	48.96	47.96
Zm00001d019084_P002	Maize	nucleus	50.12	47.8
CDX89316	Canola	endoplasmic reticulum	48.27	46.76
Bra019094.1-P	Field mustard	nucleus	49.88	46.65
CDY46689	Canola	nucleus	49.88	46.65
Bra026413.1-P	Field mustard	nucleus	44.8	45.86
CDY46690	Canola	nucleus	45.03	45.56
TraesCS2A01G190400.1	Wheat	plastid	53.81	43.88
Zm00001d021950_P007	Maize	endoplasmic reticulum, nucleus	54.27	43.44
AT5G55550.10	Thale cress	nucleus	50.81	43.39
Zm00001d019086_P001	Maize	nucleus	53.12	43.23
OQU83904	Sorghum	nucleus	44.34	42.67
GSMUA_Achr3P02300_001	Banana	nucleus	59.12	37.7
Solyc09g072790.2.1	Tomato	nucleus	32.1	35.28
Solyc03g005680.2.1	Tomato	nucleus	34.41	34.89
Solyc09g090520.2.1	Tomato	nucleus	36.72	33.47
Solyc03g121710.2.1	Tomato	nucleus	19.86	31.97
Solyc04g077520.2.1	Tomato	nucleus	23.79	30.21
Solyc07g045240.2.1	Tomato	nucleus	23.09	29.15
Solyc02g093340.2.1	Tomato	nucleus	24.48	27.25
Solyc06g062740.1.1	Tomato	cytosol	12.01	26.4
Solyc06g062730.1.1	Tomato	nucleus	19.86	23.43
Solyc02g090910.2.1	Tomato	nucleus	20.09	23.14
Solyc12g035280.1.1	Tomato	cytosol, nucleus, plastid	19.4	22.64
Solyc02g064540.1.1	Tomato	nucleus	18.48	21.62
Solyc11g044470.1.1	Tomato	mitochondrion, nucleus, plastid	9.24	15.33
Solyc10g081330.1.1	Tomato	nucleus	14.32	14.87
Solyc02g021560.2.1	Tomato	nucleus	14.78	14.85
Solyc04g082770.2.1	Tomato	cytosol, extracellular, nucleus, plastid	7.85	14.11
Solyc04g011560.2.1	Tomato	nucleus	14.55	13.4
Solyc04g049920.2.1	Tomato	nucleus	6.7	12.03
Solyc02g082270.2.1	Tomato	nucleus	7.62	11.7
Solyc12g014210.1.1	Tomato	nucleus	8.78	11.34
Solyc04g074310.2.1	Tomato	nucleus	7.62	11.26
Solyc01g008970.2.1	Tomato	nucleus	9.24	10.64

Protein Annotations

EnsemblPlants:Solyc10g006050.2.1	EnsemblPlantsGene:Solyc10g006050.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:DAZAP1_RRM2	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44291	PANTHER:PTHR44291:SF1	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000276CB84	UniProt:K4CXD7	MapMan:35.1	:

Description

No Description!

Coordinates

chr10:+:793641..797405

Molecular Weight (calculated)

45942.7 Da

IEP (calculated)

9.289

GRAVY (calculated)

-0.505

Length

433 amino acids

Sequence
(BLAST)

001: MRDRNTGRAR GFGFVVFADP VVAERVVKEK HMIDGRTVEA KKAVPRDDQQ IINRNNSSIQ GSPGGGRTKK IFVGGLASTV TESDFKTYFD QFGTITDVVV
101: MYDHNTQRPR GFGFITYDSE EAVDRTLFKI FHELNGKMVE VKRAVPKELS PAPNCSPLMG YNYGHNRANN FLNNYAAQGY NLASVGGYGV RMDGRFSPVA
201: GARAGFSQFA SPAYGMGVNL DPALSPTFAG ASNFSNNLGY GRILNPYFGA NSSRYTTPIG YSTSNNRADS FLSSPTRNLW GNIGLNASAS SGGPGSFVGS
301: GSGNYGVFGN NNANWGSLIS VPGGNSSGYG GGNFRSGENN YGLGSGGLGR NNAATTSSFT TSTGAYEGSY GDQFRGASVY GDRTWQGVSS DADGSGSFEY
401: GFGNPADVSA KESEDYIGNY NIANRQPNRG IAA

Best Arabidopsis Sequence Match ( AT3G07810.1 )
(BLAST)

001: MQSDNGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPAVA EIVITEKHNI DGRLVEAKKA VPRDDQNMVN RSNSSSIQGS
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JFN7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.