Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400027411 | Potato | nucleus | 91.7 | 87.01 |
| VIT_13s0019g03610.t01 | Wine grape | nucleus | 72.61 | 70.85 |
| KRH06306 | Soybean | nucleus | 56.43 | 50.56 |
| GSMUA_Achr3P13820_001 | Banana | cytosol | 58.51 | 50.54 |
| KRH47731 | Soybean | nucleus | 55.19 | 49.81 |
| CDY02889 | Canola | nucleus | 44.4 | 49.31 |
| AT3G54770.1 | Thale cress | nucleus | 50.62 | 46.74 |
| Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 53.94 | 46.59 |
| TraesCS4B01G197500.2 | Wheat | cytosol, mitochondrion, nucleus | 57.68 | 46.49 |
| TraesCS4A01G106800.2 | Wheat | cytosol, mitochondrion, nucleus | 57.68 | 46.18 |
| CDX73451 | Canola | cytosol | 47.3 | 45.6 |
| Bra007096.1-P | Field mustard | nucleus | 48.55 | 45.17 |
| CDX78261 | Canola | nucleus | 48.55 | 45.17 |
| Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 55.6 | 45.12 |
| CDY64698 | Canola | nucleus | 48.55 | 44.83 |
| Os03t0286500-01 | Rice | cytosol, nucleus, plastid | 57.26 | 44.52 |
| EER95048 | Sorghum | cytosol, nucleus, plastid | 56.43 | 43.87 |
| GSMUA_Achr11P... | Banana | nucleus | 47.72 | 43.4 |
| HORVU4Hr1G057110.23 | Barley | nucleus | 55.6 | 43.23 |
| TraesCS4D01G198000.3 | Wheat | cytosol | 56.43 | 42.63 |
| Solyc11g044470.1.1 | Tomato | mitochondrion, nucleus, plastid | 40.25 | 37.16 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 33.61 | 33.61 |
| Solyc04g074310.2.1 | Tomato | nucleus | 36.93 | 30.38 |
| Solyc02g082270.2.1 | Tomato | nucleus | 33.61 | 28.72 |
| Solyc03g121710.2.1 | Tomato | nucleus | 17.84 | 15.99 |
| Solyc12g014210.1.1 | Tomato | nucleus | 20.33 | 14.63 |
| Solyc07g045240.2.1 | Tomato | nucleus | 19.92 | 13.99 |
| Solyc06g062740.1.1 | Tomato | cytosol | 10.37 | 12.69 |
| Solyc04g077520.2.1 | Tomato | nucleus | 17.84 | 12.61 |
| Solyc02g093340.2.1 | Tomato | nucleus | 20.33 | 12.6 |
| Solyc02g021560.2.1 | Tomato | nucleus | 21.99 | 12.3 |
| Solyc09g072790.2.1 | Tomato | nucleus | 19.09 | 11.68 |
| Solyc03g005680.2.1 | Tomato | nucleus | 20.33 | 11.48 |
| Solyc01g008970.2.1 | Tomato | nucleus | 17.84 | 11.44 |
| Solyc09g090520.2.1 | Tomato | nucleus | 21.99 | 11.16 |
| Solyc04g014820.2.1 | Tomato | cytosol | 12.03 | 10.82 |
| Solyc10g081330.1.1 | Tomato | nucleus | 18.67 | 10.79 |
| Solyc12g035280.1.1 | Tomato | cytosol, nucleus, plastid | 16.6 | 10.78 |
| Solyc02g090910.2.1 | Tomato | nucleus | 16.18 | 10.37 |
| Solyc02g064540.1.1 | Tomato | nucleus | 15.35 | 10.0 |
| Solyc04g011560.2.1 | Tomato | nucleus | 19.09 | 9.79 |
| Solyc06g062730.1.1 | Tomato | nucleus | 14.52 | 9.54 |
| Solyc12g014600.1.1 | Tomato | nucleus | 12.86 | 7.09 |
| Solyc10g006050.2.1 | Tomato | nucleus | 12.03 | 6.7 |
| Solyc07g048030.2.1 | Tomato | nucleus | 12.03 | 6.64 |
| Solyc12g006180.1.1 | Tomato | nucleus | 12.03 | 6.62 |
| Solyc11g012470.1.1 | Tomato | nucleus | 11.62 | 6.54 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006950 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009414 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009719 |
| GO:GO:0009737 | GO:GO:0009791 | GO:GO:0010029 | InterPro:IPR000504 | InterPro:IPR012677 | UniProt:K4BRW5 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44374 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | EnsemblPlantsGene:Solyc04g049920.2 | EnsemblPlants:Solyc04g049920.2.1 | UniParc:UPI00027669EF | SEG:seg |
Description
Probable RNA-binding protein ARP1 [Source:Projected from Arabidopsis thaliana (AT3G54770) UniProtKB/Swiss-Prot;Acc:Q9M1S3]
Coordinates
chr4:+:44798202..44800847
Molecular Weight (calculated)
26188.1 Da
IEP (calculated)
8.947
GRAVY (calculated)
-0.424
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MTMSNMGDTT LTKVFVGGLA WETPKEAMKE HFDKYGDILE AVIISDKITG RSKGYGFVTF KDAESAKKAC EDATPIINGR RANCNLASLG ARRSRPSPSI
101: TPPPPPPPQQ GPNVVGARAN SASPASHVQW YYPQAAPPAS PFHHHQPLPF YGYSPAYIAT DMNYNHKVSY NGGGYVNGHF SQVYPGQAMM PVYHPYYQFH
201: HQSQTMGLPA HIYSPTPAAP IPTLMSKPTS IPPTAVCLAV E
101: TPPPPPPPQQ GPNVVGARAN SASPASHVQW YYPQAAPPAS PFHHHQPLPF YGYSPAYIAT DMNYNHKVSY NGGGYVNGHF SQVYPGQAMM PVYHPYYQFH
201: HQSQTMGLPA HIYSPTPAAP IPTLMSKPTS IPPTAVCLAV E
001: MTTSNNVNGC FGDTKLTKVF VGGLAWDTHK EAMYDHFIKY GDILEAVIIS DKLTRRSKGY GFVTFKDAKA ATRACEDSTP IINGRRANCN LASLGGRLRK
101: SPTMTSPQQG PKNGNRATPP HVGNHSQWYY PSGFTNQQHQ QQNHQAVPFY GYPSAYVAPN MTFNQKVGYV GGTYMNGYYA QMQPQPQSQP QPQYYHHHMY
201: GGGRVMVGAA SPMVPFYTVY PYHQSQAIGF PQPSFSKPLS FSTPPISGTV GGESIQKKAI H
101: SPTMTSPQQG PKNGNRATPP HVGNHSQWYY PSGFTNQQHQ QQNHQAVPFY GYPSAYVAPN MTFNQKVGYV GGTYMNGYYA QMQPQPQSQP QPQYYHHHMY
201: GGGRVMVGAA SPMVPFYTVY PYHQSQAIGF PQPSFSKPLS FSTPPISGTV GGESIQKKAI H
Arabidopsis Description
ARP1Probable RNA-binding protein ARP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.