Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 1
- mitochondrion 1
- cytosol 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 78.79 | 83.87 |
| TraesCS4A01G106800.2 | Wheat | cytosol, mitochondrion, nucleus | 82.15 | 81.06 |
| Os03t0286500-01 | Rice | cytosol, nucleus, plastid | 84.51 | 80.97 |
| TraesCS4B01G197500.2 | Wheat | cytosol, mitochondrion, nucleus | 81.14 | 80.6 |
| HORVU4Hr1G057110.23 | Barley | nucleus | 80.47 | 77.1 |
| TraesCS4D01G198000.3 | Wheat | cytosol | 80.47 | 74.92 |
| VIT_13s0019g03610.t01 | Wine grape | nucleus | 49.49 | 59.51 |
| Solyc04g049920.2.1 | Tomato | nucleus | 45.12 | 55.6 |
| PGSC0003DMT400027411 | Potato | nucleus | 46.46 | 54.33 |
| GSMUA_Achr3P13820_001 | Banana | cytosol | 49.49 | 52.69 |
| GSMUA_Achr11P... | Banana | nucleus | 42.42 | 47.55 |
| KRH47731 | Soybean | nucleus | 40.4 | 44.94 |
| KRH06306 | Soybean | nucleus | 40.4 | 44.61 |
| Zm00001d052212_P001 | Maize | nucleus | 23.57 | 43.48 |
| CDY02889 | Canola | nucleus | 31.65 | 43.32 |
| CDX73451 | Canola | cytosol | 35.02 | 41.6 |
| CDX78261 | Canola | nucleus | 35.35 | 40.54 |
| AT3G54770.1 | Thale cress | nucleus | 35.35 | 40.23 |
| Bra007096.1-P | Field mustard | nucleus | 35.02 | 40.15 |
| CDY64698 | Canola | nucleus | 34.68 | 39.46 |
| Zm00001d042641_P001 | Maize | nucleus | 32.32 | 32.54 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 30.3 | 32.26 |
| Zm00001d042042_P001 | Maize | nucleus | 31.99 | 27.94 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 31.65 | 27.65 |
| Zm00001d046716_P001 | Maize | nucleus | 31.65 | 26.11 |
| Zm00001d018103_P002 | Maize | plasma membrane | 27.61 | 25.79 |
| Zm00001d037209_P001 | Maize | plastid | 28.62 | 25.6 |
| Zm00001d017829_P002 | Maize | plastid | 27.95 | 24.06 |
| Zm00001d051627_P002 | Maize | plastid | 27.95 | 22.55 |
| Zm00001d016349_P002 | Maize | nucleus | 17.85 | 13.8 |
| Zm00001d011336_P002 | Maize | nucleus | 20.54 | 13.62 |
| Zm00001d044469_P003 | Maize | nucleus | 20.2 | 13.42 |
| Zm00001d030579_P001 | Maize | mitochondrion | 15.49 | 13.22 |
| Zm00001d034200_P001 | Maize | nucleus | 7.41 | 12.87 |
| Zm00001d019079_P001 | Maize | cytosol | 18.86 | 12.5 |
| Zm00001d019084_P002 | Maize | nucleus | 18.52 | 12.11 |
| Zm00001d007772_P001 | Maize | nucleus | 18.18 | 12.03 |
| Zm00001d046190_P001 | Maize | extracellular | 16.84 | 11.96 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 16.5 | 11.86 |
| Zm00001d011885_P008 | Maize | cytosol | 14.14 | 11.67 |
| Zm00001d034201_P001 | Maize | nucleus | 9.76 | 11.55 |
| Zm00001d032739_P001 | Maize | nucleus | 16.84 | 11.29 |
| Zm00001d006704_P002 | Maize | nucleus | 18.18 | 11.16 |
| Zm00001d014058_P002 | Maize | plastid | 17.51 | 10.79 |
| Zm00001d007839_P001 | Maize | cytosol | 13.13 | 10.54 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 15.82 | 10.35 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 18.86 | 10.35 |
| Zm00001d052820_P001 | Maize | extracellular, mitochondrion, plasma membrane | 13.13 | 10.18 |
| Zm00001d053572_P002 | Maize | cytosol | 18.52 | 10.02 |
| Zm00001d019086_P001 | Maize | nucleus | 17.51 | 9.77 |
| Zm00001d002141_P006 | Maize | nucleus | 16.5 | 9.4 |
| Zm00001d018730_P001 | Maize | nucleus | 11.78 | 9.36 |
| Zm00001d026397_P001 | Maize | nucleus, plasma membrane | 16.16 | 9.21 |
| Zm00001d042133_P003 | Maize | cytosol | 10.1 | 7.54 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | UniProt:B4FLF5 | EMBL:BT037943 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:ONL96854.1 |
| PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44374 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI00017B6ADF | EnsemblPlantsGene:Zm00001d028714 | EnsemblPlants:Zm00001d028714_P001 | EnsemblPlants:Zm00001d028714_T001 | SEG:seg |
Description
Probable RNA-binding protein ARP1
Coordinates
chr1:-:44013642..44016248
Molecular Weight (calculated)
31122.9 Da
IEP (calculated)
9.123
GRAVY (calculated)
-0.180
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MTMMAPHPQP LPLPQPPAPF GDTTLTKVFV GGLAWETHKD ALREHFERYG DILEAVIISD KLTGRSKGYG FVTFKEADAA KKACEDATPV INGRRANCNL
101: AALGAKPRPP PHILRPSPPA TPAPHAPALP SQHQPTPAIA VGSRGVSPVP WYYHPSTTPP PPAAHHYAHG AHQQYHGVLP FYPAAAATYG YAPNYVADLS
201: YNAKVGQAAA GGTGGSYLQG HFAYPAAAAA QGGMVAAAPN GMVPVYPFYH YHQYHASQGG VAAAHFFPPV SAAAVPAVVS KHTVMAAPKV EQVTGCS
101: AALGAKPRPP PHILRPSPPA TPAPHAPALP SQHQPTPAIA VGSRGVSPVP WYYHPSTTPP PPAAHHYAHG AHQQYHGVLP FYPAAAATYG YAPNYVADLS
201: YNAKVGQAAA GGTGGSYLQG HFAYPAAAAA QGGMVAAAPN GMVPVYPFYH YHQYHASQGG VAAAHFFPPV SAAAVPAVVS KHTVMAAPKV EQVTGCS
001: MTTSNNVNGC FGDTKLTKVF VGGLAWDTHK EAMYDHFIKY GDILEAVIIS DKLTRRSKGY GFVTFKDAKA ATRACEDSTP IINGRRANCN LASLGGRLRK
101: SPTMTSPQQG PKNGNRATPP HVGNHSQWYY PSGFTNQQHQ QQNHQAVPFY GYPSAYVAPN MTFNQKVGYV GGTYMNGYYA QMQPQPQSQP QPQYYHHHMY
201: GGGRVMVGAA SPMVPFYTVY PYHQSQAIGF PQPSFSKPLS FSTPPISGTV GGESIQKKAI H
101: SPTMTSPQQG PKNGNRATPP HVGNHSQWYY PSGFTNQQHQ QQNHQAVPFY GYPSAYVAPN MTFNQKVGYV GGTYMNGYYA QMQPQPQSQP QPQYYHHHMY
201: GGGRVMVGAA SPMVPFYTVY PYHQSQAIGF PQPSFSKPLS FSTPPISGTV GGESIQKKAI H
Arabidopsis Description
ARP1Probable RNA-binding protein ARP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.