Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER90058 | Sorghum | plastid | 69.44 | 87.41 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 66.39 | 85.66 |
| Os06t0622900-01 | Rice | cytosol, mitochondrion, nucleus | 61.67 | 80.73 |
| TraesCS7A01G398200.1 | Wheat | cytosol, mitochondrion, nucleus | 63.33 | 80.57 |
| TraesCS7B01G299000.1 | Wheat | mitochondrion, nucleus, plastid | 63.06 | 79.65 |
| HORVU7Hr1G093450.6 | Barley | nucleus | 65.0 | 79.59 |
| TraesCS7D01G392500.1 | Wheat | cytosol, nucleus, plastid | 62.5 | 78.4 |
| AT5G53720.1 | Thale cress | cytosol | 13.89 | 50.0 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 23.61 | 48.02 |
| PGSC0003DMT400025900 | Potato | nucleus | 36.67 | 45.99 |
| Zm00001d052212_P001 | Maize | nucleus | 20.56 | 45.96 |
| CDY51790 | Canola | cytosol | 13.61 | 45.79 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 29.72 | 44.4 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 13.61 | 43.75 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 19.17 | 43.4 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 26.94 | 36.74 |
| Zm00001d042641_P001 | Maize | nucleus | 30.0 | 36.61 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 23.61 | 36.02 |
| KRH53608 | Soybean | nucleus | 24.44 | 35.77 |
| AT5G53680.1 | Thale cress | cytosol | 16.67 | 35.5 |
| KRH64318 | Soybean | nucleus | 24.72 | 34.63 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 16.11 | 33.14 |
| Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 25.56 | 32.97 |
| Zm00001d017829_P002 | Maize | plastid | 31.39 | 32.75 |
| Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 26.11 | 31.65 |
| Zm00001d042042_P001 | Maize | nucleus | 29.72 | 31.47 |
| Zm00001d018103_P002 | Maize | plasma membrane | 27.78 | 31.45 |
| Zm00001d037209_P001 | Maize | plastid | 28.89 | 31.33 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 29.44 | 31.18 |
| Zm00001d051627_P002 | Maize | plastid | 31.11 | 30.43 |
| Bra029612.1-P | Field mustard | nucleus | 14.17 | 17.77 |
| AT3G06970.1 | Thale cress | nucleus | 14.72 | 16.72 |
| CDY05301 | Canola | nucleus | 15.83 | 16.24 |
| CDY24657 | Canola | nucleus | 14.72 | 15.59 |
| CDY08023 | Canola | nucleus | 15.28 | 15.28 |
| Zm00001d044469_P003 | Maize | nucleus | 18.89 | 15.21 |
| Zm00001d007839_P001 | Maize | cytosol | 15.28 | 14.86 |
| CDX74070 | Canola | cytosol | 14.72 | 14.72 |
| Zm00001d030579_P001 | Maize | mitochondrion | 14.17 | 14.66 |
| Zm00001d016349_P002 | Maize | nucleus | 15.56 | 14.58 |
| Zm00001d011336_P002 | Maize | nucleus | 18.06 | 14.51 |
| Bra001228.1-P | Field mustard | cytosol | 14.44 | 14.36 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 16.11 | 14.04 |
| Zm00001d046190_P001 | Maize | extracellular | 16.11 | 13.88 |
| Zm00001d032739_P001 | Maize | nucleus | 16.67 | 13.54 |
| Zm00001d034201_P001 | Maize | nucleus | 8.89 | 12.75 |
| Zm00001d018730_P001 | Maize | nucleus | 13.06 | 12.57 |
| Zm00001d011885_P008 | Maize | cytosol | 12.5 | 12.5 |
| Zm00001d014058_P002 | Maize | plastid | 16.67 | 12.45 |
| Zm00001d034200_P001 | Maize | nucleus | 5.83 | 12.28 |
| Zm00001d052820_P001 | Maize | extracellular, mitochondrion, plasma membrane | 12.78 | 12.01 |
| Zm00001d019079_P001 | Maize | cytosol | 14.44 | 11.61 |
| Zm00001d007772_P001 | Maize | nucleus | 14.17 | 11.36 |
| Zm00001d019084_P002 | Maize | nucleus | 14.17 | 11.23 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 13.89 | 11.01 |
| Zm00001d002141_P006 | Maize | nucleus | 15.83 | 10.94 |
| Zm00001d026397_P001 | Maize | nucleus, plasma membrane | 15.56 | 10.75 |
| Zm00001d006704_P002 | Maize | nucleus | 14.17 | 10.54 |
| Zm00001d053572_P002 | Maize | cytosol | 15.56 | 10.2 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 14.72 | 9.8 |
| Zm00001d019086_P001 | Maize | nucleus | 14.44 | 9.77 |
| Zm00001d042133_P003 | Maize | cytosol | 9.72 | 8.79 |
Protein Annotations
| EntrezGene:103638790 | Gene3D:3.30.70.330 | MapMan:35.1 | UniProt:A0A1D6P4M0 | ProteinID:AQL04901.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44828 | PANTHER:PTHR44828:SF2 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0008436D6D | EnsemblPlantsGene:Zm00001d046716 | EnsemblPlants:Zm00001d046716_P001 | EnsemblPlants:Zm00001d046716_T001 |
| SEG:seg | : | : | : | : | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Coordinates
chr9:+:103209754..103214088
Molecular Weight (calculated)
39190.8 Da
IEP (calculated)
9.573
GRAVY (calculated)
-0.299
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MTPQRSPMGT GGGGSSGGGG GGPPALHYLS GPYGDTTFTK VFVGGLAWET RSEGLRAHFE VYGDILEAVV ITDRATGRSK GYGFVTFRDP ESARMACMDP
101: YPVIDGRRAN CNLAILGRPG PAVPFGSLCA FNYYDKISPS FQCGIVAPTR PVIPYNGGVA VPGGMYVQSP TYQQSPYNYS QAFVYPYGPS AYGPEYLYQQ
201: NAYGPYVGQQ YVPVYGGPRT VGPAVYPYGQ FGQPVPSDHA YSPGYAPSHV LPLSNQNVSA ANVVRIPPVQ QQLPPGKKFS ELHALSNSFW SLPVHHRSRR
301: TTFLNKRQVD KDARKHPIVC SRTKKSHTAK LGGMLFFLAN CFLLHSKGCR YPWLPELLIM
101: YPVIDGRRAN CNLAILGRPG PAVPFGSLCA FNYYDKISPS FQCGIVAPTR PVIPYNGGVA VPGGMYVQSP TYQQSPYNYS QAFVYPYGPS AYGPEYLYQQ
201: NAYGPYVGQQ YVPVYGGPRT VGPAVYPYGQ FGQPVPSDHA YSPGYAPSHV LPLSNQNVSA ANVVRIPPVQ QQLPPGKKFS ELHALSNSFW SLPVHHRSRR
301: TTFLNKRQVD KDARKHPIVC SRTKKSHTAK LGGMLFFLAN CFLLHSKGCR YPWLPELLIM
001: MAYQPVPGSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RQHFEQYGEI LEAVVIADKN TGRSKGYGFV TFRDPEAARR ACADPTPIID GRRANCNLAS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I2E4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.