Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G398200.1 | Wheat | cytosol, mitochondrion, nucleus | 97.56 | 98.94 |
| TraesCS7B01G299000.1 | Wheat | mitochondrion, nucleus, plastid | 97.56 | 98.25 |
| Os06t0622900-01 | Rice | cytosol, mitochondrion, nucleus | 85.02 | 88.73 |
| EER90058 | Sorghum | plastid | 85.02 | 85.31 |
| HORVU7Hr1G093450.6 | Barley | nucleus | 85.71 | 83.67 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 80.84 | 83.15 |
| Zm00001d046716_P001 | Maize | nucleus | 78.4 | 62.5 |
| AT5G53720.1 | Thale cress | cytosol | 17.07 | 49.0 |
| PGSC0003DMT400025900 | Potato | nucleus | 48.08 | 48.08 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 28.57 | 46.33 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 37.98 | 45.23 |
| CDY51790 | Canola | cytosol | 16.72 | 44.86 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 16.72 | 42.86 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 23.69 | 42.77 |
| TraesCS6D01G258900.4 | Wheat | plastid | 40.42 | 40.28 |
| TraesCS3D01G380100.1 | Wheat | nucleus | 40.07 | 38.85 |
| KRH53608 | Soybean | nucleus | 32.06 | 37.4 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 30.66 | 37.29 |
| KRH64318 | Soybean | nucleus | 32.4 | 36.19 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 33.1 | 35.98 |
| AT5G53680.1 | Thale cress | cytosol | 20.56 | 34.91 |
| TraesCS4D01G225900.1 | Wheat | nucleus | 29.97 | 34.54 |
| TraesCS6D01G297300.1 | Wheat | plastid | 36.59 | 33.65 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 20.21 | 33.14 |
| TraesCS3D01G505900.1 | Wheat | mitochondrion | 36.24 | 32.91 |
| TraesCS7D01G180800.1 | Wheat | nucleus | 34.49 | 32.89 |
| TraesCS4D01G198000.3 | Wheat | cytosol | 33.45 | 30.09 |
| Bra029612.1-P | Field mustard | nucleus | 18.12 | 18.12 |
| AT3G06970.1 | Thale cress | nucleus | 18.82 | 17.03 |
| CDY05301 | Canola | nucleus | 19.51 | 15.95 |
| CDY24657 | Canola | nucleus | 18.82 | 15.88 |
| TraesCS3D01G232300.1 | Wheat | nucleus | 23.0 | 15.0 |
| CDY08023 | Canola | nucleus | 17.77 | 14.17 |
| TraesCS6D01G173900.1 | Wheat | nucleus | 19.86 | 13.94 |
| CDX74070 | Canola | cytosol | 17.42 | 13.89 |
| TraesCS6D01G272500.1 | Wheat | nucleus | 16.72 | 13.83 |
| Bra001228.1-P | Field mustard | cytosol | 17.07 | 13.54 |
| TraesCS3D01G480300.1 | Wheat | cytosol | 17.07 | 13.14 |
| TraesCS7D01G281300.1 | Wheat | nucleus | 16.03 | 12.96 |
| TraesCS1D01G237800.3 | Wheat | cytosol | 16.38 | 12.91 |
| TraesCS7D01G362200.1 | Wheat | nucleus | 19.51 | 12.61 |
| TraesCS1D01G147600.1 | Wheat | nucleus | 19.86 | 12.56 |
| TraesCS4D01G152200.1 | Wheat | nucleus | 20.21 | 12.53 |
| TraesCS2D01G256500.1 | Wheat | nucleus | 14.98 | 11.5 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 18.47 | 11.28 |
| TraesCS2D01G529100.1 | Wheat | nucleus | 19.16 | 10.81 |
| TraesCS3D01G186500.1 | Wheat | nucleus | 17.42 | 10.42 |
| TraesCS5D01G415400.1 | Wheat | nucleus | 12.54 | 10.4 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G392500.1 | EnsemblPlantsGene:TraesCS7D01G392500 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR44828 |
| PANTHER:PTHR44828:SF2 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| TIGR:cd12384 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr7D:+:507420283..507423088
Molecular Weight (calculated)
30154.6 Da
IEP (calculated)
8.492
GRAVY (calculated)
-0.396
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MMTPQRSPAV MAGGGGGGGG GGGGGGGGTP ALHYLSGPYG DTTYTKVFVG GLAWETRSEG LRAHFEAYGD ILEAVVITDR ATGRSKGYGF VTFRDPDSAR
101: MACMDPYPVI DGRRANCNLA ILGRPGPAVP FGPIGPIMPY NGGAAVPGGM YVPSPTYQQP PYNYSQALVY PPYGPSTYGP EYLYPQNAYG PYVGQQYVPV
201: YGGPRTVGPA VYPYGQFGQP VPSDHSYSPG YVPGHLLPLS NQNAANARAS AVQQQYPPGA PRPQQQLLLP ARVQQFPPNN VSEQMSG
101: MACMDPYPVI DGRRANCNLA ILGRPGPAVP FGPIGPIMPY NGGAAVPGGM YVPSPTYQQP PYNYSQALVY PPYGPSTYGP EYLYPQNAYG PYVGQQYVPV
201: YGGPRTVGPA VYPYGQFGQP VPSDHSYSPG YVPGHLLPLS NQNAANARAS AVQQQYPPGA PRPQQQLLLP ARVQQFPPNN VSEQMSG
001: MAYHSIPSSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RRHFDQYGDI LEAVVITDKN TGRSKGYGFV TFRDPEAARR ACVDPTPIID GRRANCNLAS
101: LGRSRPPMQY AVIPHAPGRV RPPSPYVGSV QSPRGLHFGS HPYHQPPTYN YQQGVVYPYG VTPYGPDYMY SQSQGFYGPY MGQQYLQVYG VPGAVNSPGY
201: QYGQLSHTIP GAHGYTAGQG YSHPGSHVLQ LGATSPMSAI QSPYPSPSAP THQRVIVQTP PQYIQSSGSD QTTG
101: LGRSRPPMQY AVIPHAPGRV RPPSPYVGSV QSPRGLHFGS HPYHQPPTYN YQQGVVYPYG VTPYGPDYMY SQSQGFYGPY MGQQYLQVYG VPGAVNSPGY
201: QYGQLSHTIP GAHGYTAGQG YSHPGSHVLQ LGATSPMSAI QSPYPSPSAP THQRVIVQTP PQYIQSSGSD QTTG
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HUQ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.