Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 7
- golgi 5
- extracellular 5
- vacuole 4
- plasma membrane 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G53720.1 | Thale cress | cytosol | 33.71 | 59.0 |
| AT5G53680.1 | Thale cress | cytosol | 38.86 | 40.24 |
| HORVU6Hr1G070140.3 | Barley | plastid | 31.43 | 35.26 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 31.43 | 34.59 |
| GSMUA_Achr4P09830_001 | Banana | mitochondrion | 29.14 | 33.77 |
| HORVU6Hr1G070150.1 | Barley | plastid | 31.43 | 32.93 |
| Zm00001d052212_P001 | Maize | nucleus | 30.29 | 32.92 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 30.29 | 29.94 |
| Os02t0755400-01 | Rice | plastid | 29.14 | 28.98 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 36.0 | 26.14 |
| KRH53608 | Soybean | nucleus | 33.14 | 23.58 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 30.86 | 22.88 |
| AT1G33470.1 | Thale cress | cytosol | 31.43 | 22.45 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 30.86 | 22.41 |
| KRH64318 | Soybean | nucleus | 32.0 | 21.79 |
| TraesCS6B01G306600.1 | Wheat | plastid | 34.86 | 21.4 |
| TraesCS6D01G258900.4 | Wheat | plastid | 34.86 | 21.18 |
| Os06t0622900-01 | Rice | cytosol, mitochondrion, nucleus | 33.14 | 21.09 |
| TraesCS6A01G278300.3 | Wheat | plastid | 34.86 | 20.89 |
| TraesCS4A01G068100.1 | Wheat | nucleus | 29.71 | 20.88 |
| TraesCS4D01G225900.1 | Wheat | nucleus | 29.71 | 20.88 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 31.43 | 20.83 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 33.14 | 20.79 |
| GSMUA_Achr8P24330_001 | Banana | nucleus, plastid | 34.29 | 20.69 |
| TraesCS7A01G398200.1 | Wheat | cytosol, mitochondrion, nucleus | 33.14 | 20.49 |
| AT1G20880.1 | Thale cress | nucleus | 32.0 | 20.44 |
| TraesCS7B01G299000.1 | Wheat | mitochondrion, nucleus, plastid | 33.14 | 20.35 |
| AT1G76460.1 | Thale cress | nucleus | 33.14 | 20.35 |
| TraesCS7D01G392500.1 | Wheat | cytosol, nucleus, plastid | 33.14 | 20.21 |
| Os02t0714000-01 | Rice | nucleus, plastid | 33.14 | 20.21 |
| EER90058 | Sorghum | plastid | 32.57 | 19.93 |
| TraesCS7D01G180800.1 | Wheat | nucleus | 33.71 | 19.6 |
| TraesCS7A01G178700.2 | Wheat | nucleus | 33.71 | 19.41 |
| HORVU7Hr1G093450.6 | Barley | nucleus | 32.57 | 19.39 |
| TraesCS7B01G084600.1 | Wheat | nucleus | 33.14 | 19.33 |
| OQU85520 | Sorghum | nucleus, plastid | 32.57 | 19.32 |
| PGSC0003DMT400025900 | Potato | nucleus | 31.43 | 19.16 |
| AT3G54770.1 | Thale cress | nucleus | 28.57 | 19.16 |
| HORVU7Hr1G036920.2 | Barley | mitochondrion, nucleus | 32.57 | 19.06 |
| AT1G78260.1 | Thale cress | nucleus | 30.86 | 18.82 |
| TraesCS4B01G225300.1 | Wheat | nucleus | 29.14 | 18.68 |
| HORVU4Hr1G063360.1 | Barley | nucleus | 29.14 | 18.61 |
| HORVU6Hr1G070170.1 | Barley | mitochondrion, nucleus, plastid | 34.86 | 18.37 |
| KXG30724 | Sorghum | plastid | 31.43 | 17.74 |
| AT1G22330.1 | Thale cress | nucleus | 29.14 | 17.53 |
| TraesCS6B01G348100.1 | Wheat | plastid | 30.86 | 17.36 |
| TraesCS6D01G297300.1 | Wheat | plastid | 30.86 | 17.31 |
| Zm00001d018103_P002 | Maize | plasma membrane | 31.43 | 17.3 |
| HORVU6Hr1G078060.1 | Barley | plastid | 30.86 | 17.09 |
| AT2G46780.1 | Thale cress | nucleus | 32.57 | 16.96 |
| Os06t0220600-01 | Rice | plastid | 32.57 | 16.62 |
| Zm00001d046716_P001 | Maize | nucleus | 33.14 | 16.11 |
| Zm00001d037209_P001 | Maize | plastid | 30.29 | 15.96 |
| Zm00001d017829_P002 | Maize | plastid | 31.43 | 15.94 |
| OQU76075 | Sorghum | plastid | 32.0 | 15.86 |
| AT1G22910.3 | Thale cress | nucleus | 31.43 | 15.85 |
| AT3G06970.1 | Thale cress | nucleus | 28.57 | 15.77 |
| Zm00001d051627_P002 | Maize | plastid | 32.57 | 15.49 |
| AT2G22090.2 | Thale cress | nucleus | 22.29 | 11.24 |
| TraesCS6A01G318100.1 | Wheat | nucleus | 30.29 | 10.88 |
| AT3G15010.2 | Thale cress | nucleus | 21.71 | 9.41 |
| AT1G17640.1 | Thale cress | nucleus | 18.86 | 8.94 |
| AT2G22100.1 | Thale cress | nucleus | 18.86 | 8.64 |
| AT4G36960.2 | Thale cress | cytosol | 17.71 | 8.18 |
| AT2G41060.3 | Thale cress | nucleus | 20.57 | 7.98 |
| AT2G33410.1 | Thale cress | nucleus | 18.29 | 7.92 |
| AT3G13224.2 | Thale cress | nucleus | 15.43 | 7.54 |
| AT3G56860.10 | Thale cress | nucleus | 19.43 | 7.11 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 18.29 | 7.06 |
| AT1G58470.2 | Thale cress | cytosol, nucleus, plastid | 14.29 | 6.94 |
| AT4G26650.1 | Thale cress | nucleus | 17.71 | 6.81 |
| AT4G14300.1 | Thale cress | nucleus | 16.0 | 6.81 |
| AT3G07810.2 | Thale cress | nucleus | 18.29 | 6.46 |
| AT5G55550.10 | Thale cress | nucleus | 18.29 | 6.31 |
| AT5G40490.1 | Thale cress | nucleus | 14.86 | 6.15 |
| AT2G19380.1 | Thale cress | nucleus | 20.57 | 5.87 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:6240527 | ProteinID:ABF59463.1 | ProteinID:AED91675.1 | ArrayExpress:AT5G11412 |
| EnsemblPlantsGene:AT5G11412 | RefSeq:AT5G11412 | TAIR:AT5G11412 | RefSeq:AT5G11412-TAIR-G | EnsemblPlants:AT5G11412.1 | TAIR:AT5G11412.1 |
| Unigene:At.69225 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_001119208.1 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44374 | UniProt:Q1G378 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | TMHMM:TMhelix | UniParc:UPI0000D7C8BF | SEG:seg |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q1G378]
Coordinates
chr5:-:3640026..3640876
Molecular Weight (calculated)
19900.8 Da
IEP (calculated)
6.780
GRAVY (calculated)
-0.195
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIFISSTFL RLLDFLNVFL IVGTFLSLIF FDTCDRDVAQ HYANENVDTR YTKIYVGGLP WETRNEGLRS YFEQFGDIIH VNMVCDRETG RSEGYGFVTF
101: RDAESATRAC QNPKPVIDGR EAKCNLAYIG GRVNNNQNAQ QQQVLPMYPT GTSFHHPNII PTHLMVIGHP MALTT
101: RDAESATRAC QNPKPVIDGR EAKCNLAYIG GRVNNNQNAQ QQQVLPMYPT GTSFHHPNII PTHLMVIGHP MALTT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.