Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G068100.1 | Wheat | nucleus | 86.08 | 94.38 |
| TraesCS4D01G225900.1 | Wheat | nucleus | 85.71 | 93.98 |
| HORVU4Hr1G063360.1 | Barley | nucleus | 92.67 | 92.34 |
| AT5G53720.1 | Thale cress | cytosol | 16.48 | 45.0 |
| CDY51790 | Canola | cytosol | 16.85 | 42.99 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 27.84 | 42.94 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 16.85 | 41.07 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 23.81 | 40.88 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 30.77 | 34.85 |
| KRH64318 | Soybean | nucleus | 31.5 | 33.46 |
| TraesCS3B01G419200.1 | Wheat | nucleus | 36.26 | 33.45 |
| KRH53608 | Soybean | nucleus | 30.04 | 33.33 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 28.57 | 33.05 |
| PGSC0003DMT400025900 | Potato | nucleus | 34.43 | 32.75 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 31.5 | 32.58 |
| TraesCS3B01G562300.3 | Wheat | mitochondrion | 35.16 | 30.77 |
| AT5G53680.1 | Thale cress | cytosol | 19.05 | 30.77 |
| TraesCS7B01G299000.1 | Wheat | mitochondrion, nucleus, plastid | 31.5 | 30.18 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 18.68 | 29.14 |
| TraesCS4B01G197500.2 | Wheat | cytosol, mitochondrion, nucleus | 31.87 | 29.1 |
| TraesCS6B01G306600.1 | Wheat | plastid | 29.67 | 28.42 |
| TraesCS7B01G084600.1 | Wheat | nucleus | 28.94 | 26.33 |
| TraesCS6B01G348100.1 | Wheat | plastid | 27.47 | 24.12 |
| Bra029612.1-P | Field mustard | nucleus | 19.05 | 18.12 |
| AT3G06970.1 | Thale cress | nucleus | 19.78 | 17.03 |
| CDY24657 | Canola | nucleus | 20.15 | 16.18 |
| CDY05301 | Canola | nucleus | 20.15 | 15.67 |
| CDX74070 | Canola | cytosol | 19.41 | 14.72 |
| CDY08023 | Canola | nucleus | 19.41 | 14.72 |
| Bra001228.1-P | Field mustard | cytosol | 18.32 | 13.81 |
| TraesCS7B01G266900.1 | Wheat | nucleus | 18.68 | 13.49 |
| TraesCS3B01G250700.1 | Wheat | golgi | 21.25 | 13.18 |
| TraesCS6B01G321300.2 | Wheat | nucleus | 17.95 | 13.14 |
| TraesCS6B01G217500.1 | Wheat | nucleus | 18.68 | 12.32 |
| TraesCS1B01G168200.1 | Wheat | nucleus | 19.41 | 11.73 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 19.41 | 11.25 |
| TraesCS3B01G532600.3 | Wheat | cytosol | 14.65 | 10.72 |
| TraesCS1B01G249300.1 | Wheat | cytosol | 14.29 | 10.68 |
| TraesCS7B01G178300.1 | Wheat | nucleus | 13.92 | 10.67 |
| TraesCS3B01G211700.1 | Wheat | nucleus | 16.12 | 9.71 |
| TraesCS5B01G410100.1 | Wheat | nucleus | 12.45 | 9.69 |
| TraesCS2B01G556700.1 | Wheat | nucleus | 17.22 | 9.23 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G225300.1 | EnsemblPlantsGene:TraesCS4B01G225300 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR44374 |
| PANTHER:PTHR44374:SF3 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| TIGR:cd12384 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr4B:+:471953204..471956334
Molecular Weight (calculated)
28966.1 Da
IEP (calculated)
6.721
GRAVY (calculated)
-0.527
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGDTTFTKL FVGGLAWQTQ RDAMRRYFEQ FGDIAEAVVI ADKHTGRSRG YGFVTFRDPD AAARALQDPT PVIDGRRANC NLAALGASQR AHPAAAAPFG
101: MVRSTPPATS SSSYQGSGAA AIAASYFPQQ AHYTYPYYYG YTGGYSHENM YQMQMSYYGA HGGTSVQQQQ QQQSKVQTYY TAAGPEGTQQ GFSPYYLQQM
201: QAASNQGQNS SAAILQYSQM MQYAAHMQQA AHAAGLHGAD APESASDAAT GAGGAAAAVG SDTSSDTDRR AAA
101: MVRSTPPATS SSSYQGSGAA AIAASYFPQQ AHYTYPYYYG YTGGYSHENM YQMQMSYYGA HGGTSVQQQQ QQQSKVQTYY TAAGPEGTQQ GFSPYYLQQM
201: QAASNQGQNS SAAILQYSQM MQYAAHMQQA AHAAGLHGAD APESASDAAT GAGGAAAAVG SDTSSDTDRR AAA
001: MAYHSIPSSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RRHFDQYGDI LEAVVITDKN TGRSKGYGFV TFRDPEAARR ACVDPTPIID GRRANCNLAS
101: LGRSRPPMQY AVIPHAPGRV RPPSPYVGSV QSPRGLHFGS HPYHQPPTYN YQQGVVYPYG VTPYGPDYMY SQSQGFYGPY MGQQYLQVYG VPGAVNSPGY
201: QYGQLSHTIP GAHGYTAGQG YSHPGSHVLQ LGATSPMSAI QSPYPSPSAP THQRVIVQTP PQYIQSSGSD QTTG
101: LGRSRPPMQY AVIPHAPGRV RPPSPYVGSV QSPRGLHFGS HPYHQPPTYN YQQGVVYPYG VTPYGPDYMY SQSQGFYGPY MGQQYLQVYG VPGAVNSPGY
201: QYGQLSHTIP GAHGYTAGQG YSHPGSHVLQ LGATSPMSAI QSPYPSPSAP THQRVIVQTP PQYIQSSGSD QTTG
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HUQ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.