Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G272500.1 | Wheat | nucleus | 91.42 | 98.27 |
| TraesCS6A01G291100.1 | Wheat | nucleus | 89.81 | 98.24 |
| Os08t0320100-01 | Rice | nucleus | 71.31 | 76.0 |
| EES01076 | Sorghum | nucleus | 70.78 | 75.64 |
| Zm00001d030579_P001 | Maize | mitochondrion | 69.97 | 75.0 |
| GSMUA_Achr1P19260_001 | Banana | nucleus | 56.57 | 62.43 |
| GSMUA_AchrUn_... | Banana | cytosol | 54.42 | 61.7 |
| GSMUA_Achr1P09440_001 | Banana | cytosol | 55.76 | 61.36 |
| VIT_19s0015g00920.t01 | Wine grape | nucleus | 54.16 | 58.05 |
| PGSC0003DMT400044868 | Potato | nucleus | 52.01 | 56.73 |
| KRH17717 | Soybean | nucleus | 53.35 | 56.53 |
| Solyc07g045240.2.1 | Tomato | nucleus | 51.74 | 56.27 |
| VIT_18s0117g00150.t01 | Wine grape | nucleus | 53.08 | 55.15 |
| GSMUA_Achr8P25380_001 | Banana | nucleus | 55.76 | 54.88 |
| VIT_12s0057g01280.t01 | Wine grape | nucleus | 37.27 | 53.88 |
| CDY24201 | Canola | nucleus | 48.26 | 49.72 |
| AT3G13224.2 | Thale cress | nucleus | 47.72 | 49.72 |
| Bra039380.1-P | Field mustard | nucleus | 47.72 | 49.17 |
| CDY43360 | Canola | nucleus | 47.72 | 49.17 |
| TraesCS7B01G178300.1 | Wheat | nucleus | 46.11 | 48.31 |
| TraesCS7B01G266900.1 | Wheat | nucleus | 37.0 | 36.51 |
| PGSC0003DMT400044866 | Potato | extracellular | 51.74 | 36.14 |
| TraesCS6B01G217500.1 | Wheat | nucleus | 39.41 | 35.51 |
| Solyc12g035280.1.1 | Tomato | cytosol, nucleus, plastid | 31.37 | 31.54 |
| TraesCS1B01G168200.1 | Wheat | nucleus | 31.64 | 26.11 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 30.29 | 23.99 |
| TraesCS1B01G249300.1 | Wheat | cytosol | 20.38 | 20.82 |
| TraesCS3B01G532600.3 | Wheat | cytosol | 19.57 | 19.57 |
| TraesCS3B01G419200.1 | Wheat | nucleus | 15.28 | 19.26 |
| TraesCS5B01G410100.1 | Wheat | nucleus | 17.96 | 19.09 |
| TraesCS4B01G225300.1 | Wheat | nucleus | 13.14 | 17.95 |
| TraesCS3B01G250700.1 | Wheat | golgi | 20.11 | 17.05 |
| TraesCS7B01G299000.1 | Wheat | mitochondrion, nucleus, plastid | 12.87 | 16.84 |
| TraesCS3B01G562300.3 | Wheat | mitochondrion | 13.67 | 16.35 |
| TraesCS6B01G306600.1 | Wheat | plastid | 12.33 | 16.14 |
| TraesCS4B01G197500.2 | Wheat | cytosol, mitochondrion, nucleus | 12.33 | 15.38 |
| TraesCS3B01G211700.1 | Wheat | nucleus | 18.23 | 15.01 |
| TraesCS7B01G084600.1 | Wheat | nucleus | 11.53 | 14.33 |
| TraesCS6B01G348100.1 | Wheat | plastid | 11.8 | 14.15 |
| TraesCS2B01G556700.1 | Wheat | nucleus | 15.55 | 11.39 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G321300.2 | EnsemblPlantsGene:TraesCS6B01G321300 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PFAM:PF00076 |
| PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr6B:-:569044828..569047475
Molecular Weight (calculated)
39443.6 Da
IEP (calculated)
9.421
GRAVY (calculated)
-0.582
Length
373 amino acids
Sequence
(BLAST)
(BLAST)
001: MKQQDGASPA KMFIGGLSRQ TSMDTFKEYF GKYGEIIDAV IMKDRHTQKP RGFGFITYSD PAIVDRVIED NHVIDGKQVE IKRTIPKGAA PLKDFKTKKI
101: FVGGLPTALT DGEFKDFFSK FGKVVEHEII CDHSTNRSRG FGFIVFDAEK TVDDLLAKKG NKIDLNGTQV EIKKAEPKKP SNPPHSLDSK PRRSPYADGY
201: DGFASRYNNG GRFAPYKSPG FGARPGSYSS AYVPGSYSSA YVPGSYSSAY VPGSYSSAYP GDYSSGYGGY DGAFGGHHGE SSLYSSRFGG SYGGGLGGAY
301: GRDAVPYGGG LGGAYGRDAV PYGTSSYGPS YDSSGASADP SVRSGVAGLY GARGGYGSSS GGGATGRYHP YAG
101: FVGGLPTALT DGEFKDFFSK FGKVVEHEII CDHSTNRSRG FGFIVFDAEK TVDDLLAKKG NKIDLNGTQV EIKKAEPKKP SNPPHSLDSK PRRSPYADGY
201: DGFASRYNNG GRFAPYKSPG FGARPGSYSS AYVPGSYSSA YVPGSYSSAY VPGSYSSAYP GDYSSGYGGY DGAFGGHHGE SSLYSSRFGG SYGGGLGGAY
301: GRDAVPYGGG LGGAYGRDAV PYGTSSYGPS YDSSGASADP SVRSGVAGLY GARGGYGSSS GGGATGRYHP YAG
001: MDPYGTETVI EDEIHDPKPS EDIEDDDDKS QPHSGGGVDS AGKIFVGGLA RETTSAEFLK HFGKYGEITD SVIMKDRKTG QPRGFGFVTY ADSSVVDKVI
101: QDNHIIIGKQ VEIKRTIPRG SMSSNDFKTK KIFVGGIPSS VDDDEFKEFF MQFGELKEHQ IMRDHSTGRS RGFGFVTYES EDMVDHLLAK GNRIELSGTQ
201: VEIKKAEPKK PNSVTTPSKR FGDSRSNFGG GYGDGYGGGH GGGYGGPGGP YKSGGGYGGG RSGGYGGYGG EFGGYGGGGY GGGVGPYRGE PALGYSGRYG
301: GGGGGYNRGG YSMGGGGGYG GGPGDMYGGS YGEPGGGYGG PSGSYGGGYG SSGIGGYGGG MGGAGGGGYR GGGGYDMGGV GGGGAGGYGA GGGGNGGGSF
401: YGGGGGRGGY GGGGSGRYHP YGR
101: QDNHIIIGKQ VEIKRTIPRG SMSSNDFKTK KIFVGGIPSS VDDDEFKEFF MQFGELKEHQ IMRDHSTGRS RGFGFVTYES EDMVDHLLAK GNRIELSGTQ
201: VEIKKAEPKK PNSVTTPSKR FGDSRSNFGG GYGDGYGGGH GGGYGGPGGP YKSGGGYGGG RSGGYGGYGG EFGGYGGGGY GGGVGPYRGE PALGYSGRYG
301: GGGGGYNRGG YSMGGGGGYG GGPGDMYGGS YGEPGGGYGG PSGSYGGGYG SSGIGGYGGG MGGAGGGGYR GGGGYDMGGV GGGGAGGYGA GGGGNGGGSF
401: YGGGGGRGGY GGGGSGRYHP YGR
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9FM47]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.