Factsheet for Solyc12g035280.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0057g01280.t01	Wine grape	nucleus	27.49	39.53
Solyc07g045240.2.1	Tomato	nucleus	35.58	38.48
GSMUA_Achr1P09440_001	Banana	cytosol	33.96	37.17
GSMUA_Achr1P19260_001	Banana	nucleus	33.69	36.98
KRH17717	Soybean	nucleus	35.04	36.93
GSMUA_AchrUn_...	Banana	cytosol	32.61	36.78
EES01076	Sorghum	nucleus	31.81	33.81
TraesCS6D01G272500.1	Wheat	nucleus	31.54	33.72
Os08t0320100-01	Rice	nucleus	31.81	33.71
GSMUA_Achr8P25380_001	Banana	nucleus	33.96	33.25
CDY24201	Canola	nucleus	32.34	33.15
Zm00001d030579_P001	Maize	mitochondrion	31.0	33.05
CDY43360	Canola	nucleus	32.08	32.87
Bra039380.1-P	Field mustard	nucleus	32.08	32.87
AT3G13224.2	Thale cress	nucleus	31.27	32.4
TraesCS6A01G291100.1	Wheat	nucleus	29.65	32.26
TraesCS6B01G321300.2	Wheat	nucleus	31.54	31.37
Zm00001d052820_P001	Maize	extracellular, mitochondrion, plasma membrane	32.08	31.07
OQU81002	Sorghum	nucleus	27.76	30.75
HORVU7Hr1G060930.1	Barley	plasma membrane	29.11	30.51
GSMUA_Achr9P12880_001	Banana	cytosol	18.87	30.43
TraesCS7B01G178300.1	Wheat	nucleus	28.84	30.06
TraesCS7D01G281300.1	Wheat	nucleus	28.57	29.86
TraesCS7A01G282600.1	Wheat	cytosol	28.03	29.71
Solyc02g093340.2.1	Tomato	nucleus	31.0	29.56
Solyc03g121710.2.1	Tomato	nucleus	20.49	28.25
Solyc06g062740.1.1	Tomato	cytosol	12.94	24.37
Solyc03g005680.2.1	Tomato	nucleus	26.95	23.42
Solyc04g077520.2.1	Tomato	nucleus	20.22	21.99
Solyc07g048030.2.1	Tomato	nucleus	25.07	21.28
Solyc04g014820.2.1	Tomato	cytosol	15.09	20.9
Solyc09g090520.2.1	Tomato	nucleus	26.68	20.84
Solyc09g072790.2.1	Tomato	nucleus	21.83	20.56
Solyc06g062730.1.1	Tomato	nucleus	20.22	20.44
Solyc02g090910.2.1	Tomato	nucleus	20.22	19.95
Solyc12g006180.1.1	Tomato	nucleus	22.91	19.41
Solyc10g006050.2.1	Tomato	nucleus	22.64	19.4
Os08t0492100-02	Rice	nucleus	22.64	19.27
Solyc11g044470.1.1	Tomato	mitochondrion, nucleus, plastid	12.94	18.39
Solyc12g014600.1.1	Tomato	nucleus	21.29	18.08
Solyc11g012470.1.1	Tomato	nucleus	20.75	17.99
Solyc04g049920.2.1	Tomato	nucleus	10.78	16.6
Solyc02g064540.1.1	Tomato	nucleus	15.9	15.95
Solyc04g082770.2.1	Tomato	cytosol, extracellular, nucleus, plastid	9.97	15.35
Solyc04g074310.2.1	Tomato	nucleus	11.59	14.68
Solyc02g021560.2.1	Tomato	nucleus	15.9	13.69
Solyc02g082270.2.1	Tomato	nucleus	9.97	13.12
Solyc10g081330.1.1	Tomato	nucleus	14.56	12.95
Solyc04g011560.2.1	Tomato	nucleus	15.36	12.13
Solyc01g008970.2.1	Tomato	nucleus	9.43	9.31
Solyc12g014210.1.1	Tomato	nucleus	8.09	8.96

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009521	GO:GO:0009522	GO:GO:0009579	GO:GO:0009767	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0019684	InterPro:IPR000504	InterPro:IPR012677
InterPro:IPR036408	UniProt:K4DDZ4	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00421	PFscan:PS50102
InterPro:PSI_PsaA/B_sf	InterPro:PS_antenna-like	PANTHER:PTHR45276	PANTHER:PTHR45276:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom
SUPFAM:SSF54928	SUPFAM:SSF81558	EnsemblPlantsGene:Solyc12g035280.1	EnsemblPlants:Solyc12g035280.1.1	UniParc:UPI0002769D11	SEG:seg

Description

No Description!

Coordinates

chr12:+:59132143..59137821

Molecular Weight (calculated)

40903.9 Da

IEP (calculated)

8.772

GRAVY (calculated)

-0.447

Length

371 amino acids

Sequence
(BLAST)

001: MFVEVGIPEQ FVKYFEKYGE IRDSVIIKDR RTSIPRGFGF ITYVDSSVFD IVIAETHNIN DKEIKNTIPK GSAESKDFRK KNGFLLAAFL LLWMTGFFSE
101: YGKVGDCNII RDHVYKWSRG FIFIEFDEEQ VVDNLLCRGT MIDMLGNQVE FKKLEPKKPS FPTSGHSYGN ESRGRTYNDS YDGGFGNSYN NFGSGWGFGR
201: ASYRSFGGTS DPSLGYPTRY GSNRSGYDTR GASGYGGGGL MGAYGRGGGY GGNVGDGSGA SYESGPNICY GGPEGLYGSR TGYGGSSRYH PMAGGLHMRA
301: CDLYGANTKK KPWFTFGHAS FALLFFFGHI WHGARTLFRD VFSCIDPSLD AKVEFGAFQK LGDPTTKRQA A

Best Arabidopsis Sequence Match ( AT3G13224.2 )
(BLAST)

001: MGSRSRNDNF QSGDGASPGK IFIGGLHKDT TNTVFNKHFG KYGEITDSVI MRDRHTGQPR GFGFITFADP SVVDKVIEDT HVINGKQVEI KRTIPKGAGG
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LHL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.