Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43360 | Canola | nucleus | 98.34 | 98.34 |
| AT3G13224.2 | Thale cress | nucleus | 89.78 | 90.78 |
| VIT_19s0015g00920.t01 | Wine grape | nucleus | 71.82 | 74.71 |
| VIT_18s0117g00150.t01 | Wine grape | nucleus | 67.68 | 68.25 |
| KRH17717 | Soybean | nucleus | 64.36 | 66.19 |
| PGSC0003DMT400044868 | Potato | nucleus | 59.67 | 63.16 |
| Solyc07g045240.2.1 | Tomato | nucleus | 59.39 | 62.68 |
| GSMUA_AchrUn_... | Banana | cytosol | 56.08 | 61.7 |
| GSMUA_Achr1P19260_001 | Banana | nucleus | 56.35 | 60.35 |
| GSMUA_Achr1P09440_001 | Banana | cytosol | 56.08 | 59.88 |
| Os08t0320100-01 | Rice | nucleus | 55.52 | 57.43 |
| EES01076 | Sorghum | nucleus | 55.25 | 57.31 |
| Zm00001d030579_P001 | Maize | mitochondrion | 53.87 | 56.03 |
| GSMUA_Achr8P25380_001 | Banana | nucleus | 55.52 | 53.03 |
| TraesCS7D01G281300.1 | Wheat | nucleus | 51.38 | 52.39 |
| TraesCS7A01G282600.1 | Wheat | cytosol | 50.55 | 52.29 |
| TraesCS7B01G178300.1 | Wheat | nucleus | 51.38 | 52.25 |
| HORVU7Hr1G060930.1 | Barley | plasma membrane | 50.83 | 51.98 |
| TraesCS6D01G272500.1 | Wheat | nucleus | 49.72 | 51.87 |
| TraesCS6A01G291100.1 | Wheat | nucleus | 48.62 | 51.61 |
| Zm00001d052820_P001 | Maize | extracellular, mitochondrion, plasma membrane | 53.87 | 50.91 |
| GSMUA_Achr9P12880_001 | Banana | cytosol | 32.04 | 50.43 |
| TraesCS6B01G321300.2 | Wheat | nucleus | 49.72 | 48.26 |
| OQU81002 | Sorghum | nucleus | 39.5 | 42.69 |
| PGSC0003DMT400044866 | Potato | extracellular | 59.39 | 40.26 |
| CDY36357 | Canola | nucleus | 56.08 | 37.45 |
| CDY42577 | Canola | nucleus | 56.35 | 37.43 |
| CDY26229 | Canola | nucleus | 37.85 | 36.93 |
| CDY48318 | Canola | nucleus | 37.85 | 36.83 |
| CDY12068 | Canola | nucleus | 32.04 | 32.4 |
| Solyc12g035280.1.1 | Tomato | cytosol, nucleus, plastid | 33.15 | 32.34 |
| Os08t0492100-02 | Rice | nucleus | 38.12 | 31.65 |
| CDX90262 | Canola | nucleus | 32.87 | 31.15 |
| CDY23739 | Canola | nucleus | 32.6 | 30.81 |
| CDX79527 | Canola | nucleus | 34.25 | 30.54 |
| CDY17173 | Canola | nucleus | 31.49 | 30.24 |
| CDX84689 | Canola | nucleus | 33.98 | 30.15 |
| CDY67299 | Canola | nucleus | 31.22 | 29.66 |
| CDX75170 | Canola | extracellular | 12.71 | 28.22 |
| CDY37724 | Canola | nucleus | 25.14 | 28.17 |
| CDY07975 | Canola | nucleus | 35.36 | 27.18 |
| CDY50131 | Canola | nucleus | 28.45 | 26.96 |
| CDX74030 | Canola | nucleus | 35.08 | 26.91 |
| CDY66272 | Canola | nucleus | 35.64 | 26.38 |
| CDY22136 | Canola | nucleus | 35.36 | 26.34 |
| CDY35966 | Canola | nucleus | 35.64 | 26.11 |
| CDY41059 | Canola | nucleus | 30.39 | 25.76 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 29.28 | 25.54 |
| CDX77783 | Canola | nucleus | 29.83 | 25.41 |
| CDY46690 | Canola | nucleus | 29.83 | 25.23 |
| CDY51790 | Canola | cytosol | 7.46 | 25.23 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 28.45 | 25.06 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 7.73 | 25.0 |
| CDX92807 | Canola | nucleus | 30.66 | 24.67 |
| CDX94301 | Canola | nucleus | 30.11 | 24.66 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 23.48 | 24.57 |
| CDY11989 | Canola | nucleus | 29.28 | 24.54 |
| CDY46689 | Canola | nucleus | 30.94 | 24.19 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 24.03 | 23.97 |
| CDY36753 | Canola | nucleus | 28.73 | 23.91 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 23.76 | 23.63 |
| CDX89316 | Canola | endoplasmic reticulum | 28.73 | 23.27 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 22.65 | 22.59 |
| CDY28918 | Canola | mitochondrion | 29.28 | 21.9 |
| CDY42724 | Canola | cytosol | 22.65 | 21.64 |
| CDX69279 | Canola | nucleus | 14.09 | 21.61 |
| CDY69852 | Canola | cytosol | 22.65 | 21.47 |
| CDY31859 | Canola | nucleus | 13.54 | 20.33 |
| CDY01349 | Canola | nucleus | 13.26 | 19.92 |
| CDY25957 | Canola | nucleus | 30.39 | 19.89 |
| CDY02889 | Canola | nucleus | 11.88 | 19.82 |
| CDY33653 | Canola | nucleus | 13.81 | 19.76 |
| CDX73451 | Canola | cytosol | 13.54 | 19.6 |
| CDY69197 | Canola | nucleus | 11.88 | 19.11 |
| CDX96615 | Canola | nucleus | 13.26 | 19.05 |
| CDX78261 | Canola | nucleus | 13.54 | 18.92 |
| CDY25759 | Canola | nucleus | 12.98 | 18.88 |
| CDY31508 | Canola | nucleus | 12.98 | 18.8 |
| CDY04769 | Canola | nucleus | 12.15 | 18.57 |
| CDY26001 | Canola | nucleus | 20.72 | 18.43 |
| CDY24106 | Canola | nucleus | 20.99 | 18.4 |
| CDY55846 | Canola | nucleus | 20.17 | 18.2 |
| CDY29496 | Canola | nucleus | 12.98 | 18.01 |
| CDX73279 | Canola | cytosol | 11.88 | 17.77 |
| CDY64698 | Canola | nucleus | 12.71 | 17.62 |
| CDX88283 | Canola | nucleus | 13.54 | 17.5 |
| CDY27186 | Canola | nucleus | 21.55 | 17.37 |
| CDX72106 | Canola | nucleus | 21.82 | 17.36 |
| CDY25867 | Canola | nucleus | 19.06 | 17.04 |
| CDY06947 | Canola | nucleus | 20.17 | 16.98 |
| CDY57580 | Canola | nucleus | 20.72 | 16.93 |
| CDX76015 | Canola | nucleus | 13.81 | 16.39 |
| CDY40554 | Canola | nucleus | 29.01 | 16.01 |
| CDX88432 | Canola | nucleus | 11.88 | 15.14 |
| CDX69277 | Canola | mitochondrion | 7.73 | 15.05 |
| CDX87594 | Canola | nucleus | 13.26 | 15.0 |
| CDX68024 | Canola | nucleus | 11.6 | 14.84 |
| CDX87460 | Canola | nucleus | 11.6 | 14.74 |
| CDX79253 | Canola | nucleus | 11.33 | 14.64 |
| CDY41556 | Canola | nucleus | 11.6 | 14.48 |
| CDY67263 | Canola | nucleus | 12.98 | 14.33 |
| CDX76950 | Canola | nucleus | 11.88 | 13.96 |
| CDY41557 | Canola | nucleus | 12.15 | 13.92 |
| CDY21399 | Canola | mitochondrion | 5.52 | 13.79 |
| CDY13782 | Canola | nucleus | 11.6 | 13.68 |
| CDY27523 | Canola | nucleus | 12.15 | 13.62 |
| CDX80046 | Canola | nucleus | 11.88 | 13.61 |
| CDY48016 | Canola | nucleus | 12.15 | 13.5 |
| CDY46642 | Canola | nucleus | 10.77 | 13.49 |
| CDY21356 | Canola | nucleus | 10.77 | 13.45 |
| CDY13339 | Canola | mitochondrion | 5.8 | 12.5 |
| CDY15850 | Canola | nucleus | 12.43 | 12.16 |
| CDY00446 | Canola | nucleus | 11.33 | 12.06 |
| CDY47382 | Canola | golgi, plastid | 13.81 | 12.02 |
| CDY08023 | Canola | nucleus | 11.6 | 11.67 |
| CDY05301 | Canola | nucleus | 10.5 | 10.83 |
| CDY24657 | Canola | nucleus | 9.94 | 10.59 |
| CDX74070 | Canola | cytosol | 10.22 | 10.28 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078GFQ6 | UniProt:A0A078GFQ6 | EnsemblPlants:CDY24201 | ProteinID:CDY24201 |
| ProteinID:CDY24201.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00026301001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR45276 |
| PANTHER:PTHR45276:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EF1F10 |
| SEG:seg | : | : | : | : | : |
Description
BnaC01g37810DBnaC01g37810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFQ6]
Coordinates
chrLK032155:-:235523..237730
Molecular Weight (calculated)
37706.3 Da
IEP (calculated)
8.829
GRAVY (calculated)
-0.752
Length
362 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSRSRNENF QSGDGASPGK IFIGGLHKDT TNTEFNKHFG KYGEITDSVI MRDRHTGLPR GFGFITFADP SVVDQVIEDT HTFNGKQVEI KRTIPKGAAG
101: GGNQSKDFKT KKIFVGGIPS SVTEDELKDF FAKYGTIVEH QIIRDHETNR SRGFGFVIFD SEEVVDELLS KGNMVDMADT QVEIKKAEPK KSSNRSPPSY
201: GSHPRGRSSF NDSYGGPYGG PYGGFDGGYG PPLGGPIRSH GGPPSRFAAG YGYGRGGVGP EFGGGYGGYG GGSLGYRSEP PLGYSSRFGP YGSGFGGEGY
301: GGGGGGGYGR GGGEGYGGYG GGPGYGGGFE SGGPGGSYEG AGGPGPYGRG YSSSSRYHPY AR
101: GGNQSKDFKT KKIFVGGIPS SVTEDELKDF FAKYGTIVEH QIIRDHETNR SRGFGFVIFD SEEVVDELLS KGNMVDMADT QVEIKKAEPK KSSNRSPPSY
201: GSHPRGRSSF NDSYGGPYGG PYGGFDGGYG PPLGGPIRSH GGPPSRFAAG YGYGRGGVGP EFGGGYGGYG GGSLGYRSEP PLGYSSRFGP YGSGFGGEGY
301: GGGGGGGYGR GGGEGYGGYG GGPGYGGGFE SGGPGGSYEG AGGPGPYGRG YSSSSRYHPY AR
001: MGSRSRNDNF QSGDGASPGK IFIGGLHKDT TNTVFNKHFG KYGEITDSVI MRDRHTGQPR GFGFITFADP SVVDKVIEDT HVINGKQVEI KRTIPKGAGG
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LHL2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.